View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_26 (Length: 425)

Name: NF9873_low_26
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_26
NF9873_low_26
[»] chr7 (1 HSPs)
chr7 (11-425)||(5475661-5476065)
[»] chr4 (4 HSPs)
chr4 (71-141)||(8403371-8403441)
chr4 (364-425)||(8359970-8360031)
chr4 (295-340)||(35952645-35952690)
chr4 (302-338)||(5832724-5832760)
[»] scaffold0697 (1 HSPs)
scaffold0697 (291-340)||(1626-1675)
[»] chr8 (4 HSPs)
chr8 (295-340)||(27213533-27213578)
chr8 (295-340)||(31236605-31236650)
chr8 (301-340)||(13844624-13844663)
chr8 (308-340)||(12606857-12606889)
[»] chr5 (2 HSPs)
chr5 (291-340)||(22611765-22611814)
chr5 (301-340)||(39205872-39205911)
[»] chr1 (3 HSPs)
chr1 (291-340)||(21530671-21530720)
chr1 (295-340)||(12443488-12443533)
chr1 (301-334)||(19562655-19562688)
[»] chr6 (5 HSPs)
chr6 (301-340)||(677829-677868)
chr6 (301-340)||(7996406-7996445)
chr6 (301-340)||(8022356-8022395)
chr6 (291-340)||(7723278-7723327)
chr6 (296-340)||(19040339-19040383)
[»] chr3 (3 HSPs)
chr3 (301-340)||(8383249-8383288)
chr3 (295-340)||(5339094-5339139)
chr3 (301-348)||(12674520-12674568)
[»] chr2 (4 HSPs)
chr2 (301-340)||(21782846-21782885)
chr2 (301-340)||(27084254-27084293)
chr2 (302-340)||(31284041-31284079)
chr2 (296-340)||(18420462-18420506)
[»] scaffold0122 (1 HSPs)
scaffold0122 (295-340)||(7996-8041)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 425
Target Start/End: Complemental strand, 5476065 - 5475661
Alignment:
Q  11 caaaggataaaacaaagtcatagtattttcacagtttttatggaaatagttataaaaaactaagttataaaaaactaggtttttccccttcaacttcaaa 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  5476065 caaaggataaaacaaagtcatagtattttcagagtttttatggaaatagttataaaaaactaagtt---------------tttccccttcaacttcaaa 5475981  T
Q  111 taagttaatccaaacagacaccatatcaattatgcaaatattaagattaaa-attcattttagaccctaaatgccctagggttttcaccacttccatata 209  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| |||| ||||    
T  5475980 taagttaatccaaacagacatcatatcaattatgcaaatattaagattaaacattcattttagaccctaaatgcagtagggttttcaccatttccctata 5475881  T
Q  210 ttagaaatctcttctttttacttaacatgcacaaacacgacagagagac---gccaac-gcagttgcttatattatgaagcacaaacatgatacagacac 305  Q
    ||||||||||||||||||||||||||||||||  || |    || | ||   |  ||| |||||||||||||| ||||||||| |||| || ||||| ||    
T  5475880 ttagaaatctcttctttttacttaacatgcacgcactcacttgatacacttagttaactgcagttgcttatatcatgaagcacgaacacgacacagatac 5475781  T
Q  306 gccgacgctgctaataatttgagaaaatcatataaaattcagtagcttacctcatagcttttgagttgtttggttgtgattgggggaacccaattattaa 405  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||    
T  5475780 gccgacgctgctaataatttgagaaaatcatataaaattaagtagcttaccttatggcttttgagttgtttggttatgattgggggaacccaattatcaa 5475681  T
Q  406 caatccatttacgacgaacc 425  Q
    |||||||||||||| |||||    
T  5475680 caatccatttacgatgaacc 5475661  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 8403441 - 8403371
Alignment:
Q  71 taagttataaaaaactaggtttttccccttcaacttcaaataagttaatccaaacagacaccatatcaatt 141  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8403441 taagttataaaaaactaagtttttccccttcaacttcaaataagttaatccaaacagaaaccatatcaatt 8403371  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 8359970 - 8360031
Alignment:
Q  364 ttttgagttgtttggttgtgattgggggaacccaattattaacaatccatttacgacgaacc 425  Q
    |||||||||||| | |||||||| ||||||||||||| | |  ||||||||||||| |||||    
T  8359970 ttttgagttgttggtttgtgattcggggaacccaattgtgattaatccatttacgatgaacc 8360031  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 35952690 - 35952645
Alignment:
Q  295 gatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  35952690 gatacggacacgccgccactgctaataatttgataaaatcatataa 35952645  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 5832760 - 5832724
Alignment:
Q  302 acacgccgacgctgctaataatttgagaaaatcatat 338  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  5832760 acacgtcgacactgctaataatttgagaaaatcatat 5832724  T

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Target: scaffold0697 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 1626 - 1675
Alignment:
Q  291 acatgatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||||| |||||||||||||| | | ||||||||||||||||||||||||    
T  1626 acatgacacagacacgccgacaccgttaataatttgagaaaatcatataa 1675  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 27213533 - 27213578
Alignment:
Q  295 gatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  27213533 gatacagacacgccgacactgctaataatttcagaaaatcacataa 27213578  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 31236650 - 31236605
Alignment:
Q  295 gatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  31236650 gatacggacacgccgacactgctaataatttgagaaaatcacataa 31236605  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 13844663 - 13844624
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatcacataa 13844624  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 12606889 - 12606857
Alignment:
Q  308 cgacgctgctaataatttgagaaaatcatataa 340  Q
    |||| ||||||||||||||||||||||||||||    
T  12606889 cgacactgctaataatttgagaaaatcatataa 12606857  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 22611814 - 22611765
Alignment:
Q  291 acatgatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||||||||||||||||||| || |||||||||||| ||||||| ||||    
T  22611814 acatgatacagacacgccgacactcctaataatttgaaaaaatcacataa 22611765  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 39205872 - 39205911
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  39205872 gacacgtcgacactgctaataatttgagaaaatcatataa 39205911  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 21530671 - 21530720
Alignment:
Q  291 acatgatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||||| |||||||||||||| | | ||||||||||||||||||||||||    
T  21530671 acatgacacagacacgccgacaccgttaataatttgagaaaatcatataa 21530720  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 12443533 - 12443488
Alignment:
Q  295 gatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||| ||||||||||| | ||||||||||||||||||||| ||||    
T  12443533 gatacggacacgccgacacagctaataatttgagaaaatcacataa 12443488  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 19562688 - 19562655
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatc 334  Q
    ||||||||||| ||||||||||||||||||||||    
T  19562688 gacacgccgacactgctaataatttgagaaaatc 19562655  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 677829 - 677868
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  677829 gacacgccgacactgttaataatttgagaaaatcatataa 677868  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 7996445 - 7996406
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  7996445 gacatgccgacactgctaataatttgagaaaatcatataa 7996406  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 8022356 - 8022395
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  8022356 gacatgccgacactgctaataatttgagaaaatcatataa 8022395  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 7723327 - 7723278
Alignment:
Q  291 acatgatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||||| || ||||||  ||| ||||||||||||||||||||||||||||    
T  7723327 acatgacactgacacgtggacactgctaataatttgagaaaatcatataa 7723278  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 19040339 - 19040383
Alignment:
Q  296 atacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||| ||||||||||| | ||||||||||||||||||||| ||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaaaatcacataa 19040383  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 8383249 - 8383288
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  8383249 gacacgccgacaccgctaataatttgagaaaatcatataa 8383288  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 5339094 - 5339139
Alignment:
Q  295 gatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||||||||||||||||  || ||||||||||||||||||| ||||    
T  5339094 gatacagacacgccgacattgttaataatttgagaaaatcacataa 5339139  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 12674568 - 12674520
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa-aattcagt 348  Q
    ||||| ||||| ||||||||||||||||||||||| |||| ||||||||    
T  12674568 gacacaccgacactgctaataatttgagaaaatcaaataataattcagt 12674520  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 21782885 - 21782846
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  21782885 gacacgccgacactgctaataatttgagaaaatcacataa 21782846  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 27084254 - 27084293
Alignment:
Q  301 gacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  27084254 gacactccgacactgctaataatttgagaaaatcatataa 27084293  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 31284041 - 31284079
Alignment:
Q  302 acacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  31284041 acacgccgacactgctaataatttgagaaaatcacataa 31284079  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 18420506 - 18420462
Alignment:
Q  296 atacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    |||| |||||||| || ||||||||||||||||||||||| ||||    
T  18420506 atactgacacgccaacactgctaataatttgagaaaatcacataa 18420462  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 7996 - 8041
Alignment:
Q  295 gatacagacacgccgacgctgctaataatttgagaaaatcatataa 340  Q
    ||||||||||||||||| |  |||||||||||| ||||||||||||    
T  7996 gatacagacacgccgacacaactaataatttgaaaaaatcatataa 8041  T

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