View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_27 (Length: 424)
Name: NF9873_low_27
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 32849726 - 32849471
Alignment:
| Q |
19 |
cctcagtctcagaggtacaattaatctacacatgcaaagctctactcaggttactttaccatcgctgacaaacctgacaatcgatgtttattatgctgaa |
118 |
Q |
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| T |
32849726 |
cctcagtctcagaggtacaattaatctacacatgcaaagctctactcaggttactttaccatctctgaggaacctgacaatcgatgtttattatgctgaa |
32849627 |
T |
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| Q |
119 |
gtgccttccgtgaatttacttctatttggctgccaaaacattgaaattttgtatcttaaatttaccacccaaagcttggacaaactctgcatcccacctt |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32849626 |
gtggcttccgtgaatttacttctatttggctgccaaaacattgaaattttgtatcttaaatttaccacccaaagcttggacaaactctgcatcccacctt |
32849527 |
T |
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| Q |
219 |
ccttgaaaaggttgacaatctccattaagaagttgggtcgtacttcaacaaaggtt |
274 |
Q |
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| T |
32849526 |
ccttgaaaaggttgacaatctccattaagaagttgggtcgtacttcaacaaaggtt |
32849471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 32849393 - 32849320
Alignment:
| Q |
351 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttc |
424 |
Q |
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| T |
32849393 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttc |
32849320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 4427917 - 4427848
Alignment:
| Q |
106 |
ttattatgctgaagtgccttccgtgaatttacttctatttggctgccaaaacattgaaattttgtatctt |
175 |
Q |
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| T |
4427917 |
ttattatgtggaagtgccttccttgaatttacttctatgtggctgcccaaacattgaaattctttatctt |
4427848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 4412901 - 4412754
Alignment:
| Q |
19 |
cctcagtctcagaggtacaattaatctacacatgcaaagctctactcaggttactttaccatcgctgacaaacctgacaatcgatgtttattatgctgaa |
118 |
Q |
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||||||||||| |||||||| || ||||||| ||| ||||||| | |||||||||| |||| |||| || ||| ||| | |||||||| ||| |
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| T |
4412901 |
cctcagtctcattagtacaattgatttacacatccaaggctctacgccggttactttaacatcactgaagaagctggtaattaacacttattatgtggaa |
4412802 |
T |
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| Q |
119 |
gtgccttccgtgaatttacttctatttggctgccaaaacattgaaatt |
166 |
Q |
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| T |
4412801 |
gtgccttccttgaatttacttctatgtggctgtccaaacattgaaatt |
4412754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 17478275 - 17478346
Alignment:
| Q |
352 |
ttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttc |
424 |
Q |
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| T |
17478275 |
ttttgtactaattagtagttggtgt-cttgtacaaacagtggctgcttggtgaaccccacaatctactttttc |
17478346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 4427437 - 4427365
Alignment:
| Q |
351 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttc |
424 |
Q |
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| T |
4427437 |
gttttgtactaattactatttgatg-tcatgttcaaatagtggctgcttggagagccccatgatctaaattttc |
4427365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 8341327 - 8341388
Alignment:
| Q |
351 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatga |
413 |
Q |
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| T |
8341327 |
gttttgtactaattactacttgatatcgt-gtacaaacagtggctgctaggtgaaccccatga |
8341388 |
T |
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