View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_28 (Length: 416)
Name: NF9873_low_28
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 37760733 - 37760906
Alignment:
| Q |
224 |
acccttgcttatttaccatttcaacgttcaaaatgaacaattaacaaagaattcaagcnnnnnnnacgctgttttttcatcatagatactctcttttata |
323 |
Q |
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| T |
37760733 |
acccttgcttatttaccatttcaacgttcaaaatgaacaattaacaaagaattcaagctttctttacgctgttttttcatcatagatactctcttttata |
37760832 |
T |
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| Q |
324 |
ttaacaatggcatttttccgttgcaactacaagaaacataaatggtacacacattctcgtttctttctttgaga |
397 |
Q |
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| T |
37760833 |
ttaacaatggtatttttccgttgcaactacaagaaacaaaaatggtacacacattctcgtttctttctttgaga |
37760906 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 37760577 - 37760659
Alignment:
| Q |
72 |
catcacaatgtaaaaacgagcacaccagaaacc-catgacgtggtaggatgcgaatatgcagaaacaaaattctcgattatac |
153 |
Q |
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||||| ||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
37760577 |
catcagaatgtaaaaacgagcacaccagaaaacgcatgacgtggtagaatgcgattatgcagaaacaaaattctcgattatac |
37760659 |
T |
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