View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_29 (Length: 414)
Name: NF9873_low_29
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Complemental strand, 5592978 - 5592591
Alignment:
| Q |
20 |
atggagacatactcggctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592978 |
atggagacatactcggctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgt |
5592879 |
T |
|
| Q |
120 |
tcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctca |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5592878 |
ccgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagccaacttggaggaattgacaaagctca |
5592779 |
T |
|
| Q |
220 |
agaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592778 |
agaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttat |
5592679 |
T |
|
| Q |
320 |
agccctgagcagtatgcagaatctctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacctttgctt |
407 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5592678 |
agccctgagcagtatgcagaaaatctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacttttgctt |
5592591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 5573241 - 5572884
Alignment:
| Q |
20 |
atggagacatactcggctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgt |
119 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573241 |
atggagacatactcagctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgt |
5573142 |
T |
|
| Q |
120 |
tcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
5573141 |
ccgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagcagacttggaggtattgacaaagctca |
5573042 |
T |
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| Q |
220 |
agaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttat |
319 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||| || | | |||| || ||||| |
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| T |
5573041 |
acaataccttaacaaatgcttgtattatgtgaatattggaagtaacgattacataaacaattactttcttccccaattctacccaacaagtcacatttat |
5572942 |
T |
|
| Q |
320 |
agccctgagcagtatgcagaatctctaattgaagagttatctttgaatttacaggtat |
377 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
5572941 |
agccctgagcagtatgcagaagctctaattcaagagttatctttgaatttactggtat |
5572884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 143 - 399
Target Start/End: Complemental strand, 5586629 - 5586373
Alignment:
| Q |
143 |
ttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgt |
242 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||| | || |||||||||||||||||||||| |||||||| | |
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| T |
5586629 |
ttgggattacagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaataccttaataaatgcttat |
5586530 |
T |
|
| Q |
243 |
attatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttatagccctgagcagtatgcagaatc |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||| ||||||| |||||| | |
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| T |
5586529 |
attatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatccaacaagacacatttatagccctcagcagtacgcagaagc |
5586430 |
T |
|
| Q |
343 |
tctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcac |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5586429 |
tctaattgaagagttatctttgaatttacaggtatccccttgaactttgtgtttcac |
5586373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 46 - 404
Target Start/End: Complemental strand, 5576246 - 5575888
Alignment:
| Q |
46 |
aattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgttcgtacagggttatgctattagcttg |
145 |
Q |
| |
|
|||||||| ||||||||||| | | |||||||||| ||||| |||||||| ||||| | ||||||||||||| | || ||||||| || ||| || ||| |
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| T |
5576246 |
aattagttattagtagatgacttgtgtatttttgtcacattgctcatacatatgccaccaaaataacattatttctgtgcagggttttgttatcagtttg |
5576147 |
T |
|
| Q |
146 |
ggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgtatt |
245 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5576146 |
ggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttgaaggtattgacaaagctcaagaataccttagcaaatgcttgtatt |
5576047 |
T |
|
| Q |
246 |
atgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttatagccctgagcagtatgcagaatctct |
345 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| ||| ||||| || | | |||| | |||||||||||||||| ||||||||| |||| |
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| T |
5576046 |
atgtgaatattggcagtaatgattacataaacaattactttcgtcctcaattctacccaacaagtcaaatttatagccctgagcaatatgcagaagctct |
5575947 |
T |
|
| Q |
346 |
aattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacctttg |
404 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||| ||||||| ||||||| |
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|
| T |
5575946 |
aattcaagagttatctttaaatttattggtatccactcaaactctgtgtttgacctttg |
5575888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 5582376 - 5582176
Alignment:
| Q |
46 |
aattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgttcgtacagggttatgctattagcttg |
145 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||| | || ||| ||||| | | |||||||||||| || |||||||||| || ||| |||||| |
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|
| T |
5582376 |
aattagtttttagtagaggactagaatatttttgttacactgcttatatacatgtcaccaaaataacattacgtctgtacagggttctgttatcagcttg |
5582277 |
T |
|
| Q |
146 |
ggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgtatt |
245 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||| ||||||| || || |||||||||||||||||||||||| |
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|
| T |
5582276 |
ggattacagttaaagaatcacaaagtaatagtttctcaaattgctagcagacttggaggtattgacagttctgaacaataccttaacaaatgcttgtatt |
5582177 |
T |
|
| Q |
246 |
a |
246 |
Q |
| |
|
| |
|
|
| T |
5582176 |
a |
5582176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 12052456 - 12052563
Alignment:
| Q |
142 |
cttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttg |
241 |
Q |
| |
|
||||| ||||||||| | ||||||| || ||||||||||| ||||||||| | ||||||| | |||| ||| |||| |||||||||||||||| ||| |
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|
| T |
12052456 |
cttggtattacagttgacaaatcaccgacttatagtttctgaaattgctactagacttggaagtcttgaaaaaactcagcaataccttaacaaatgtttg |
12052555 |
T |
|
| Q |
242 |
tattatgt |
249 |
Q |
| |
|
| |||||| |
|
|
| T |
12052556 |
tgttatgt |
12052563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 5613546 - 5613506
Alignment:
| Q |
236 |
tgcttgtattatgtgcatattggcagtaatgattacataaa |
276 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
5613546 |
tgcttgtattatgtgaatattggcagcaacgattacataaa |
5613506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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