View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_31 (Length: 388)

Name: NF9873_low_31
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_31
NF9873_low_31
[»] chr8 (9 HSPs)
chr8 (1-119)||(2409406-2409524)
chr8 (1-119)||(4751352-4751470)
chr8 (1-119)||(2404167-2404285)
chr8 (1-119)||(4746327-4746445)
chr8 (1-119)||(18346973-18347091)
chr8 (5-119)||(18342930-18343044)
chr8 (1-119)||(36959004-36959123)
chr8 (7-119)||(36962776-36962889)
chr8 (1-115)||(15695232-15695346)
[»] chr2 (3 HSPs)
chr2 (1-119)||(29884786-29884904)
chr2 (1-119)||(29889791-29889909)
chr2 (1-117)||(901555-901671)
[»] chr4 (4 HSPs)
chr4 (1-119)||(39544961-39545079)
chr4 (1-119)||(39571442-39571560)
chr4 (1-83)||(9406108-9406190)
chr4 (192-236)||(18683761-18683805)
[»] chr1 (2 HSPs)
chr1 (1-121)||(52891103-52891223)
chr1 (30-119)||(26415334-26415423)
[»] chr7 (2 HSPs)
chr7 (1-116)||(34042206-34042321)
chr7 (1-116)||(34047212-34047327)
[»] chr3 (2 HSPs)
chr3 (1-113)||(34531133-34531245)
chr3 (1-119)||(36394296-36394414)
[»] chr6 (3 HSPs)
chr6 (192-235)||(27669601-27669644)
chr6 (192-235)||(26847983-26848026)
chr6 (289-341)||(26810132-26810184)
[»] scaffold0277 (1 HSPs)
scaffold0277 (192-234)||(5548-5590)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2409524 - 2409406
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2409524 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatatgatt 2409425  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  2409424 tcttatatgtttttcaata 2409406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4751470 - 4751352
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4751470 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatatgatt 4751371  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  4751370 tcttatatgtttttcaata 4751352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2404285 - 2404167
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  2404285 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcataaataaaataagaaagaatcattcctctaatctcttatatgatt 2404186  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  2404185 tcttatatgtttttcaata 2404167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4746445 - 4746327
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4746445 tttgtcattatgtttattgtaattcctttttatatataaacaatcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatatgatt 4746346  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  4746345 tcttatatgtttttcaata 4746327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18347091 - 18346973
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  18347091 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctctcatatgatt 18346992  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  18346991 tcttatatgtttttcaata 18346973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 18343044 - 18342930
Alignment:
Q  5 tcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatttctt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  18343044 tcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctctcatatgatttctt 18342945  T
Q  105 atatgtttttcaata 119  Q
    |||||||||||||||    
T  18342944 atatgtttttcaata 18342930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 36959123 - 36959004
Alignment:
Q  1 tttgtcattatgtttattgtaattccttttta-tatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgat 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  36959123 tttgtcattatgtttattgtaattcctttttaatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctgatctcttatatgat 36959024  T
Q  100 ttcttatatgtttttcaata 119  Q
    ||||||||| ||||||||||    
T  36959023 ttcttatatatttttcaata 36959004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 36962889 - 36962776
Alignment:
Q  7 attatgtttattgtaattccttttta-tatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatttctta 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  36962889 attatgtttattgtaattcctttttaatatataaacagtcttggaccgcataaataaaataagaaagaatcatttctctaatctcttatatgatttctta 36962790  T
Q  106 tatgtttttcaata 119  Q
    ||||||||||||||    
T  36962789 tatgtttttcaata 36962776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 15695232 - 15695346
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||| ||||    
T  15695232 tttgtcattatgtttactgtaattcctttttctatataaacagtcttggactgtagaaataaaatatgaaagaattattcctctaatctctcatatgatt 15695331  T
Q  101 tcttatatgtttttc 115  Q
    |||||||||||||||    
T  15695332 tcttatatgtttttc 15695346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 29884904 - 29884786
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29884904 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatatgatt 29884805  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  29884804 tcttatatgtttttcaata 29884786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 29889909 - 29889791
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29889909 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatatgatt 29889810  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  29889809 tcttatatgtttttcaata 29889791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 901555 - 901671
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  901555 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctctcatatgatt 901654  T
Q  101 tcttatatgtttttcaa 117  Q
    |||||||||||||||||    
T  901655 tcttatatgtttttcaa 901671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39544961 - 39545079
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  39544961 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcataaataaaataagaaagaatcattcctctaatctcttatatgatt 39545060  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  39545061 tcttatatgtttttcaata 39545079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39571442 - 39571560
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  39571442 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcataaataaaataagaaagaatcattcctctaatctcttatatgatt 39571541  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  39571542 tcttatatgtttttcaata 39571560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9406190 - 9406108
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  9406190 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgtagaaataaaataagaaagagtcattcctc 9406108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 18683761 - 18683805
Alignment:
Q  192 ttttatttggctctacacttttaccaagtgagaaacttccttccc 236  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||    
T  18683761 ttttatatggttctacacttttaccaagtgggaaacttccttccc 18683805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 52891103 - 52891223
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  52891103 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaaaaaaaaagaatcattcctctaaactcttatatgatt 52891202  T
Q  101 tcttatatgtttttcaatact 121  Q
    |||||||||||||||||||||    
T  52891203 tcttatatgtttttcaatact 52891223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 26415423 - 26415334
Alignment:
Q  30 ttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatttcttatatgtttttcaata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  26415423 ttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctctcatatgatttcttatatgtttttcaata 26415334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 34042206 - 34042321
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  34042206 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgaagaaataaaataagaaagaatcattcctctaaactcttatatgatt 34042305  T
Q  101 tcttatatgtttttca 116  Q
    ||||||||||||||||    
T  34042306 tcttatatgtttttca 34042321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 34047212 - 34047327
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  34047212 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgaagaaataaaataagaaagaatcattcctctaaactcttatatgatt 34047311  T
Q  101 tcttatatgtttttca 116  Q
    ||||||||||||||||    
T  34047312 tcttatatgtttttca 34047327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34531245 - 34531133
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  34531245 tttgtcattatgtttattgtaattccttttcctatataaacagtcttggactgcagaaataaaataagaaagaatcattcttctaatctctcatatgatt 34531146  T
Q  101 tcttatatgtttt 113  Q
    |||||||||||||    
T  34531145 tcttatatgtttt 34531133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 36394296 - 36394414
Alignment:
Q  1 tttgtcattatgtttattgtaattcctttttatatataaacagtcttggactgcagaaataaaataagaaagaatcattcctctaatctcttatacgatt 100  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||| | |||||||||| |||| ||| |||||||||||||   ||| ||||    
T  36394296 tttgtcattatgtttattgtaattccttttcctataaaaacagtcttggactgtaaaaataaaatatgaaaaaattattcctctaatcttgcatatgatt 36394395  T
Q  101 tcttatatgtttttcaata 119  Q
    |||||||||||||||||||    
T  36394396 tcttatatgtttttcaata 36394414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 27669601 - 27669644
Alignment:
Q  192 ttttatttggctctacacttttaccaagtgagaaacttccttcc 235  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  27669601 ttttatttggctctacacttttaccatgtaagaaacttccttcc 27669644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 26848026 - 26847983
Alignment:
Q  192 ttttatttggctctacacttttaccaagtgagaaacttccttcc 235  Q
    |||| ||||||||||||||||||| | |||||||||||||||||    
T  26848026 ttttgtttggctctacacttttactatgtgagaaacttccttcc 26847983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 26810184 - 26810132
Alignment:
Q  289 aaaaatcacatagcttaaaaccagtaaataaagggataaaaaagttgtgatat 341  Q
    |||||||| || |||||||| || ||||||||||||  |||||||||||||||    
T  26810184 aaaaatcatatggcttaaaaacactaaataaagggaccaaaaagttgtgatat 26810132  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 5548 - 5590
Alignment:
Q  192 ttttatttggctctacacttttaccaagtgagaaacttccttc 234  Q
    |||||||||| | ||||||||||||||||| ||||||||||||    
T  5548 ttttatttggttttacacttttaccaagtgggaaacttccttc 5590  T

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