View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_32 (Length: 385)
Name: NF9873_low_32
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 39299475 - 39299103
Alignment:
| Q |
1 |
tgaagatcgttttgattcatatcaatgtattgagaagaataaagttactttactttgcaagtgaataatagctacataatatagactcctatttataata |
100 |
Q |
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| T |
39299475 |
tgaagatcgttttgattcatatcaatgtattgagaagaataaagttacttt-----gcaagtgaataatagctacataatatagactcctatttataata |
39299381 |
T |
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| Q |
101 |
tgac--------ggtgtaaaatatatttacaccatatcaattaaatcttatttttaaatgcaaaacaataagtacaagaaattggcatgtaatagaacat |
192 |
Q |
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| T |
39299380 |
tgacattatgacggtgtaaaatatatttacaccatatcaattaaatcttatttttaaatgcaaaacaataagttcaagaaattggcatgtaatagaacat |
39299281 |
T |
|
| Q |
193 |
ggaaaagtgtaggagtgaaagaaactgtgtgataggtggccagagaatattacagttgaatgaaaagggcctttgttacaacctcataattttctccctt |
292 |
Q |
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| T |
39299280 |
ggaaaagtgtaggagtgaaagaaattgtgtgataggtggccagagaatattacagttgaatgaaaagggcctttgttacaacctcataattttctccctt |
39299181 |
T |
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| Q |
293 |
atgtctactttctctattttaagcctagataagaaataccataaattatgtggaccatgaaatccaaacttagaaagt |
370 |
Q |
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| T |
39299180 |
atgtctactttctctattttaagcctagataagaaatgccataaattatgtggaccatgaaatccaaacttagaaagt |
39299103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 180 - 370
Target Start/End: Complemental strand, 26878964 - 26878774
Alignment:
| Q |
180 |
tgtaatagaacatggaaaagtgtaggagtgaaagaaactgtgtgataggtggccagagaatattacagttgaatgaaaagggcctttgttacaacctcat |
279 |
Q |
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| T |
26878964 |
tgtaatagaacatggaaaagtgtaggagtgaagcaaattgtgttataggtggtcgtagaatattacagttgaatgaaaagggcctttgttacaacctcat |
26878865 |
T |
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| Q |
280 |
aattttctcccttatgtctactttctctattttaagcctagataagaaataccataaattatgtggaccatgaaatccaaacttagaaagt |
370 |
Q |
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| T |
26878864 |
aattttctcccttatgtctactttctctattttaagcctagataagaaataccataaatgatgtggaccatgaaatccaaacttagaaagt |
26878774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 279 - 370
Target Start/End: Complemental strand, 26898090 - 26898001
Alignment:
| Q |
279 |
taattttctcccttatgtctactttctctattttaagcctagataagaaataccataaattatgtggaccatgaaatccaaacttagaaagt |
370 |
Q |
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| T |
26898090 |
taattttctccctcaggtctactttctccattttaagcctagataagaaataccataaattatgtggaccat--aatccatacttagaaagt |
26898001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 26879364 - 26879328
Alignment:
| Q |
65 |
ataatagctacataatatagactcctatttataatat |
101 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |
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| T |
26879364 |
ataataactacataatatagactcctatttagaatat |
26879328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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