View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_36 (Length: 371)
Name: NF9873_low_36
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 421511 - 421410
Alignment:
| Q |
169 |
gagatggagacaaaagtgttcagcttttttagggtgaaagtgagatcttttaagcgcacaacccatttagcatagcagaaagaaagaaagaaagaaagaa |
268 |
Q |
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| T |
421511 |
gagatggagacaaaagtgttcagcttttttagggtgaaagtgagatcttttaagcgcacaacccatttagcatagcagaaacaaagaaagaaagaaagaa |
421412 |
T |
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| Q |
269 |
ag |
270 |
Q |
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|| |
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| T |
421411 |
ag |
421410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 421664 - 421579
Alignment:
| Q |
17 |
acagatcacccaccaattacccactgtctgcagaagccgcctcataagctgaatttccctcaaactcacacaaacttaactcaact |
102 |
Q |
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| T |
421664 |
acagatcacccaccaattacccactgtctgcagaagccgcctcataagctgaatttccctcaaactcacacaaacttaactcaact |
421579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 421362 - 421330
Alignment:
| Q |
324 |
gagagagagtgtgtgtgataatagacttaatgt |
356 |
Q |
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| T |
421362 |
gagagagagtgtgtgtgataatagacttaatgt |
421330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 42974548 - 42974576
Alignment:
| Q |
242 |
agcagaaagaaagaaagaaagaaagaaag |
270 |
Q |
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| T |
42974548 |
agcagaaagaaagaaagaaagaaagaaag |
42974576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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