View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_37 (Length: 360)
Name: NF9873_low_37
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 31 - 345
Target Start/End: Original strand, 33817140 - 33817454
Alignment:
| Q |
31 |
atatgtatactatagatggatccaagttttaatacactaaatgagaacccacttttattggtaatggcatgtcgacgtcttgtgacatgatttctaggct |
130 |
Q |
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| T |
33817140 |
atatgtatactatagatggatccaagttttaatacactgaatgagaacccacttttattggtaatggcatgtcgacgtcttgtgacatgatttctaggct |
33817239 |
T |
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| Q |
131 |
agtgatgatctcctatttggtatctcaccagaaagactcgttgttggggagtctgagccattagattcagaatgtttgagtttcgaaccttacctagagg |
230 |
Q |
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| T |
33817240 |
agtgatggtctcctatttggtatctcaccagaaagactcgttgttggggagtctgagccattagattcaggatgttcgagtttcgaaccttacctagagg |
33817339 |
T |
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| Q |
231 |
atgccactatttgtatgagaacaccagtttgtttcgaatattttgtgccttatagttggagttttgttaaccttgattgatgatcgttgggttcataata |
330 |
Q |
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|| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33817340 |
ataccgctatttgtatgggaacaccagtttgtttcgaatattttgtgccttatagttggagttttgttaaccttgattgatgatcgttgggttcataata |
33817439 |
T |
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| Q |
331 |
ctagtggtatttact |
345 |
Q |
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||||||||||||||| |
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| T |
33817440 |
ctagtggtatttact |
33817454 |
T |
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