View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_39 (Length: 357)
Name: NF9873_low_39
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 19785320 - 19785663
Alignment:
| Q |
1 |
tttttctctaagaagaagaataaataaaaaacaacgccacaaccacagggagcacaaaggtgcatggaaactcactgacaaagactctttgatgactgaa |
100 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19785320 |
ttttgctctaagaacaagaataaataaaaaacaacgccacaaccacagggagcacaaaggtgcgtggaaactcactgacaaagactctttgatgactgaa |
19785419 |
T |
|
| Q |
101 |
gaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgttacacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785420 |
gaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgttacacta |
19785519 |
T |
|
| Q |
201 |
ccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttgcccacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19785520 |
ccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttgcccaataa |
19785619 |
T |
|
| Q |
301 |
aatcagccttgttgctaaatggtgcccttctgttgagtcttcct |
344 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
19785620 |
aatcagccttgctgctaaatggtgcccttctgttgactcttcct |
19785663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 93 - 344
Target Start/End: Complemental strand, 19796175 - 19795924
Alignment:
| Q |
93 |
tgactgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcg |
192 |
Q |
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|||||||||||||||| ||||| ||||||| | ||||| || ||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
19796175 |
tgactgaagaggtggcagcgagagctaaggttgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcattagctaagaagcttgttgatcg |
19796076 |
T |
|
| Q |
193 |
ttacactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttg |
292 |
Q |
| |
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||| |||||||| || |||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| | |
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| T |
19796075 |
ttatactaccgatcccaattttaagtttcttcacgattgtatctctgatcatttcgctgattgtttgaagaaggatctcgagtttttgaaatccgggtcg |
19795976 |
T |
|
| Q |
293 |
cccacaaaaatcagccttgttgctaaatggtgcccttctgttgagtcttcct |
344 |
Q |
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|||| |||||||| |||| |||||||||||||||||||||||| ||||||| |
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| T |
19795975 |
cccaataaaatcagtcttgctgctaaatggtgcccttctgttgactcttcct |
19795924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 344
Target Start/End: Complemental strand, 15835478 - 15835231
Alignment:
| Q |
97 |
tgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgttac |
196 |
Q |
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|||||||||||| ||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15835478 |
tgaagaggtggctgcgagagctaaggctcagaaagaaactgctcacgctttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgatac |
15835379 |
T |
|
| Q |
197 |
actaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttgccca |
296 |
Q |
| |
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| | |||||| |||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
15835378 |
aatcgtgaccctgattttaagttccttcataattgtatctctcatcattttgctgattgtttgaagaaggatcttgagtttttgaaatctgggtcaccca |
15835279 |
T |
|
| Q |
297 |
caaaaatcagccttgttgctaaatggtgcccttctgttgagtcttcct |
344 |
Q |
| |
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||||||||| |||| ||||||||||||||| ||| || | ||||||| |
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| T |
15835278 |
gaaaaatcagtcttgctgctaaatggtgcccctctctttactcttcct |
15835231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 148 - 342
Target Start/End: Complemental strand, 47713019 - 47712825
Alignment:
| Q |
148 |
gaaggaagagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcatttt |
247 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||||||||| || || | | |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
47713019 |
gaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttt |
47712920 |
T |
|
| Q |
248 |
gctgattgtttgaagaaggatcttcagtttttgaaatctgggttgcccacaaaaatcagccttgttgctaaatggtgcccttctgttgagtcttc |
342 |
Q |
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||||||||||| ||||| ||| || |||||||||||| ||||| | ||||||| || || |||| ||| |||||||| ||||| ||||| ||||| |
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| T |
47712919 |
gctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttc |
47712825 |
T |
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