View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_40 (Length: 355)
Name: NF9873_low_40
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 14177829 - 14178153
Alignment:
| Q |
18 |
atcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
117 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14177829 |
atcaaattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
14177928 |
T |
|
| Q |
118 |
gctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14177929 |
gctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
14178028 |
T |
|
| Q |
218 |
taaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14178029 |
taaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
14178128 |
T |
|
| Q |
318 |
ctctcgtacaaagcatattgatgtc |
342 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
14178129 |
ctctcgtacaaagcatattgatgtc |
14178153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 28608044 - 28607720
Alignment:
| Q |
18 |
atcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
117 |
Q |
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|||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608044 |
atcaaattcgattttgaaagcctacacagatgctgatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
28607945 |
T |
|
| Q |
118 |
gctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28607944 |
gctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
28607845 |
T |
|
| Q |
218 |
taaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28607844 |
taaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
28607745 |
T |
|
| Q |
318 |
ctctcgtacaaagcatattgatgtc |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
28607744 |
ctctcgtacaaagcatattgatgtc |
28607720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 12934559 - 12934883
Alignment:
| Q |
18 |
atcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12934559 |
atcagattcgcttttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
12934658 |
T |
|
| Q |
118 |
gctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12934659 |
gctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
12934758 |
T |
|
| Q |
218 |
taaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12934759 |
taaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
12934858 |
T |
|
| Q |
318 |
ctctcgtacaaagcatattgatgtc |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
12934859 |
ctctcgtacaaagcatattgatgtc |
12934883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 17123537 - 17123650
Alignment:
| Q |
237 |
attgggaatgaagcaggaaaggtac--------gttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaa |
328 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
17123537 |
attgggaatgaagcaggaaaggtacttcatgtcgttatccattgcgataatcaaagcgttttggattcgagtaagaatgcgatgtaccactcttgtacaa |
17123636 |
T |
|
| Q |
329 |
agcatattgatgtc |
342 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
17123637 |
agtatattgatgtc |
17123650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 15300345 - 15300669
Alignment:
| Q |
18 |
atcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |
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|
| T |
15300345 |
atcagattcgattttgaaaggctacacatatgcggatatggcaggtgacctggatggtagaaagtctgcttcaggaattgtgtttgcttttgcagggtga |
15300444 |
T |
|
| Q |
118 |
gctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15300445 |
gctatatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttggc |
15300544 |
T |
|
| Q |
218 |
taaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
317 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15300545 |
taaaaagaattcatgatcaattgggaatgaagcaggaaaggtacgttatccattgtgatagtcaaagcgctttggatttgagtaagaatgcgatgtacca |
15300644 |
T |
|
| Q |
318 |
ctctcgtacaaagcatattgatgtc |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15300645 |
ctctcgtacaaagcatattgatgtc |
15300669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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