View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_42 (Length: 346)

Name: NF9873_low_42
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_42
NF9873_low_42
[»] chr8 (4 HSPs)
chr8 (4-175)||(15144436-15144607)
chr8 (203-345)||(37802623-37802765)
chr8 (270-318)||(15143973-15144021)
chr8 (203-236)||(15144025-15144058)
[»] chr6 (3 HSPs)
chr6 (203-345)||(11164332-11164474)
chr6 (9-143)||(4642606-4642740)
chr6 (309-346)||(25171219-25171256)
[»] chr4 (6 HSPs)
chr4 (203-345)||(37478858-37479000)
chr4 (9-178)||(10766081-10766250)
chr4 (20-129)||(26294066-26294171)
chr4 (295-346)||(27382818-27382869)
chr4 (14-62)||(43823300-43823348)
chr4 (308-345)||(44973168-44973205)
[»] chr2 (4 HSPs)
chr2 (207-345)||(15807076-15807214)
chr2 (203-345)||(39281832-39281974)
chr2 (203-249)||(861035-861081)
chr2 (68-155)||(17891907-17891994)
[»] chr1 (3 HSPs)
chr1 (203-345)||(51545293-51545435)
chr1 (9-178)||(47265946-47266115)
chr1 (212-300)||(23172130-23172218)
[»] chr7 (10 HSPs)
chr7 (78-198)||(23964341-23964461)
chr7 (9-177)||(63714-63882)
chr7 (247-318)||(31914074-31914145)
chr7 (203-251)||(23965061-23965109)
chr7 (262-318)||(23965105-23965161)
chr7 (308-345)||(31914150-31914187)
chr7 (308-345)||(6057542-6057579)
chr7 (308-345)||(17199676-17199713)
chr7 (213-250)||(25972796-25972833)
chr7 (308-336)||(46867271-46867299)
[»] chr3 (4 HSPs)
chr3 (9-178)||(41017457-41017626)
chr3 (305-346)||(54093258-54093299)
chr3 (308-345)||(41624424-41624461)
chr3 (305-345)||(5126509-5126549)
[»] scaffold0129 (2 HSPs)
scaffold0129 (247-318)||(5063-5134)
scaffold0129 (308-345)||(5139-5176)
[»] scaffold0204 (3 HSPs)
scaffold0204 (203-249)||(29364-29410)
scaffold0204 (270-318)||(29325-29373)
scaffold0204 (308-345)||(29283-29320)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 15144607 - 15144436
Alignment:
Q  4 agtttggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaa 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||    
T  15144607 agttaggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagttggaccactgtgtccttggcaacaaagcaggctagagaaa 15144508  T
Q  104 gagaagaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaa 175  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15144507 gagaagaatgcgagtcacaattggacgccactgtggagtggtgatactccaatgcaaaggtatcagatagaa 15144436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 37802623 - 37802765
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtc 302  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||    
T  37802623 tcatgttgctgaaaatggtggaggtgttgcagaaaatgttggaaatgttaatcctggacatgttgtagttggaaatgatggacaagctgcacaaaatgtc 37802722  T
Q  303 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  37802723 agtgttggaaatgttgcaattcatggacaaaatgatgtcaatg 37802765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 15144021 - 15143973
Alignment:
Q  270 gctggaaatgatggacaagttccacaaaatgtcagtgttggaaatgttg 318  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  15144021 gctggaaatgatggacaagtcgcacaaaatgtcaatgttggaaatgttg 15143973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 15144058 - 15144025
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaa 236  Q
    ||||||||||||||||||||||||||||||||||    
T  15144058 tcatgttgctgaaaatggtggaggtgttgcagaa 15144025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 11164332 - 11164474
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtc 302  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |    
T  11164332 tcatgttgctgaaaatggtggaggtgttgtagaaaatgttggaaatgttaatcctggacatgttgtagctggaaatgatggacaagctgcacaaaatgcc 11164431  T
Q  303 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11164432 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 11164474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 4642606 - 4642740
Alignment:
Q  9 ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa 108  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||| ||    
T  4642606 ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagttggaccactgtgtccttggcagcaaagtaggctagagaaagaaaa 4642705  T
Q  109 gaatgctagtcacaattggactccactgtggagtg 143  Q
    |  ||| | |||||||||||| ||| |||||||||    
T  4642706 gcttgccaatcacaattggacaccaatgtggagtg 4642740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 25171256 - 25171219
Alignment:
Q  309 ggaaatgttgcaattcagggacaaaatgatgtcaatgt 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25171256 ggaaatgttgcaattcagggacaaaatgatgtcaatgt 25171219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 37479000 - 37478858
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtc 302  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||  | |||||||||||    
T  37479000 tcatgttgctgaaaatggtggaggtgttgcagaaaatgttgaaaatgttaatcctggacatgttgtagctggaaatgatggacaaactgcacaaaatgtc 37478901  T
Q  303 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37478900 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 37478858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 10766081 - 10766250
Alignment:
Q  9 ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa 108  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| ||    
T  10766081 ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagctggaccactatgtccttggcagcaaagtaggctagagaaagaaaa 10766180  T
Q  109 gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaat 178  Q
    |  ||| |||||||||||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||    
T  10766181 gcttgccagtcacaattggacaccagtgtggagtggtgataatccaaggcaaaggtatcaaatagaaaat 10766250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 26294171 - 26294066
Alignment:
Q  20 atgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaagaatgctagtc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||   |||||||||| ||||||||||||| ||||||| ||| ||||    
T  26294171 atgagaaaaatgagtcaaaacaagatgaaacttgatgggagagttgg-ccactgtg---ttggcagcaaagcaggctagagaaggagaagattgccagtc 26294076  T
Q  120 acaattggac 129  Q
    ||||||||||    
T  26294075 acaattggac 26294066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 27382818 - 27382869
Alignment:
Q  295 aaaatgtcagtgttggaaatgttgcaattcagggacaaaatgatgtcaatgt 346  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  27382818 aaaatgtcaatgttggaaatgttgcaattcagggacaaaatcttgtcaatgt 27382869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 43823300 - 43823348
Alignment:
Q  14 tatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagag 62  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  43823300 tatgttatgagaaaaatgagtcttaacaagatgaaacttgatgggagag 43823348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 44973168 - 44973205
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  44973168 tggaaatgttgcaattcagggacaaaatgttgtcaatg 44973205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 207 - 345
Target Start/End: Complemental strand, 15807214 - 15807076
Alignment:
Q  207 gttgctgaaaatggtggaggtgttgcagaaaattttggaaatgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtcagtg 306  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||    
T  15807214 gttgctgaaaatggtggaggtgctgcagaaaatgttggaaatgttaatcctggacatgttgtagctggaaatgatggacaagctgcacaaaatgccagtg 15807115  T
Q  307 ttggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15807114 ttggaaatgttgcaattcagggacaaaatgatgtcaatg 15807076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 39281832 - 39281974
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtc 302  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||| | ||||||||| |    
T  39281832 tcatgttggtgaaaatggtggaggtgttgcagaaaatgttggaaatgttaatcttagacatgttgtagctggaaatgatggacaagctgcacaaaatgcc 39281931  T
Q  303 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39281932 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 39281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 861081 - 861035
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatg 249  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  861081 tcatgttgctgaaaagggtggaggtgttgcagaaaatgttggaaatg 861035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 17891907 - 17891994
Alignment:
Q  68 ccactgtgtccttggcagcaatgcaggctagagaaagagaagaatgctagtcacaattggactccactgtggagtggtgatactccaa 155  Q
    ||||| ||||||||| ||||| | ||| ||||||||||||||| ||| |   |||| ||||| ||||  |||||||||||||||||||    
T  17891907 ccactatgtccttggaagcaaagtaggatagagaaagagaagactgccatcaacaagtggacaccacattggagtggtgatactccaa 17891994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 51545293 - 51545435
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtc 302  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||    
T  51545293 tcatgttgctgaaaatggtggagatgttgcagaaaatgttggaaatgttaatcctggacatgttgtagctggaaatgatggacaggctgcacaaaatgtc 51545392  T
Q  303 agtgttggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  51545393 agtgttggaaatgttgcaatttagggacaaaatgatgtcaatg 51545435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 47266115 - 47265946
Alignment:
Q  9 ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa 108  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| ||    
T  47266115 ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagctggaccactatgtccttggcagcaaagtaggctagagaaagaaaa 47266016  T
Q  109 gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaat 178  Q
    |  ||| |||||||||||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||    
T  47266015 gcttgccagtcacaattggacaccagtgtggagtggtgataatccaaggcaaaggtatcaaatagaaaat 47265946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 23172130 - 23172218
Alignment:
Q  212 tgaaaatggtggaggtgttgcagaaaattttggaaatgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatg 300  Q
    |||||||| ||||| |||||||||||||  || |||||||||||||  | || |||| |||| |||||||||||||||| |||||||||    
T  23172130 tgaaaatgctggagatgttgcagaaaatgctgaaaatgttaatcctataaatcttgttgctgaaaatgatggacaagttgcacaaaatg 23172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 23964341 - 23964461
Alignment:
Q  78 cttggcagcaatgcaggctagagaaagagaagaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaa 177  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  23964341 cttggcagcaaagcaggctagagaaagagaagaatgccagtcacaattggacaccattgtggagtggtgatactccaatgcaaaggtatcagatagaaaa 23964440  T
Q  178 tagttacaaagtgaaggtgga 198  Q
    ||| |||||||||||||||||    
T  23964441 tagctacaaagtgaaggtgga 23964461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 63714 - 63882
Alignment:
Q  9 ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa 108  Q
    |||||||||| |||||||| |||||||| ||||| |||||||| |||||||||||||| ||  ||||||||||||||||| |||| ||||||||||||||    
T  63714 ggtgttatgtcatgagaaagatgagtcagaacaaaatgaaactagatgggagagctggacctttgtgtccttggcagcaaagcagactagagaaagagaa 63813  T
Q  109 gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaa 177  Q
    || ||| || ||||| ||||| || || |||| |||||||| | ||| |||||||||||| || |||||    
T  63814 gattgcaagccacaactggacacccctatggaatggtgataatgcaaggcaaaggtatcatattgaaaa 63882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 31914074 - 31914145
Alignment:
Q  247 atgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtcagtgttggaaatgttg 318  Q
    |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  31914074 atgttaatcctggaaatgttgtagctgaaaatgatggacaagttgcacaaaatgtcaatgttggaaatgttg 31914145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 23965061 - 23965109
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatgtt 251  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  23965061 tcatgttgctgaaaatggtggaggtgttgcagaaaatgctggaaatgtt 23965109  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 23965105 - 23965161
Alignment:
Q  262 atgttgtagctggaaatgatggacaagttccacaaaatgtcagtgttggaaatgttg 318  Q
    ||||||||||||||||||||  ||||||| |||||||||||| ||||| ||||||||    
T  23965105 atgttgtagctggaaatgatcaacaagttgcacaaaatgtcaatgttgaaaatgttg 23965161  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 31914150 - 31914187
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31914150 tggaaatgttgcaattcagggacaaaatgttgtcaatg 31914187  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 6057542 - 6057579
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    ||||||||||||||||||||||||||||| || |||||    
T  6057542 tggaaatgttgcaattcagggacaaaatgttgccaatg 6057579  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 17199676 - 17199713
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    ||||||||||||||||||||||||||||| || |||||    
T  17199676 tggaaatgttgcaattcagggacaaaatgttgccaatg 17199713  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 25972833 - 25972796
Alignment:
Q  213 gaaaatggtggaggtgttgcagaaaattttggaaatgt 250  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  25972833 gaaaatgttggaggtgttgcagaaaatgttggaaatgt 25972796  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 46867299 - 46867271
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatg 336  Q
    |||||||||||||||||||||||||||||    
T  46867299 tggaaatgttgcaattcagggacaaaatg 46867271  T

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Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 41017626 - 41017457
Alignment:
Q  9 ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa 108  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| ||    
T  41017626 ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagctggaccactatgtccttggcagcaaagtaggctagagaaagaaaa 41017527  T
Q  109 gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaat 178  Q
    |  ||  |||||||||||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||    
T  41017526 gcttgtcagtcacaattggacaccagtgtggagtggtgataatccaaggcaaaggtatcaaatagaaaat 41017457  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 54093258 - 54093299
Alignment:
Q  305 tgttggaaatgttgcaattcagggacaaaatgatgtcaatgt 346  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  54093258 tgttggaaatgttgcaattcagagacaaaatgatctcaatgt 54093299  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 41624424 - 41624461
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  41624424 tggaaatgttgcaattcaaggacaaaatgttgtcaatg 41624461  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 5126509 - 5126549
Alignment:
Q  305 tgttggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||||||||||||||||| ||||||||| ||| ||||    
T  5126509 tgttggaaatgttgcaattcagagacaaaatgttgttaatg 5126549  T

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Target: scaffold0129 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 5063 - 5134
Alignment:
Q  247 atgttaatcctgaacatgttgtagctggaaatgatggacaagttccacaaaatgtcagtgttggaaatgttg 318  Q
    |||||||||||| | ||||  |||||| |||||||||||||||| |||||||||||| || |||||||||||    
T  5063 atgttaatcctggaaatgtattagctgaaaatgatggacaagttgcacaaaatgtcaatgatggaaatgttg 5134  T

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Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 5139 - 5176
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  5139 tggaaatgttgcaatttagggacaaaatgttgtcaatg 5176  T

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Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 29410 - 29364
Alignment:
Q  203 tcatgttgctgaaaatggtggaggtgttgcagaaaattttggaaatg 249  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||    
T  29410 tcatgttgctgaaaatggtggaggtgttgcagaaaatgctggaaatg 29364  T

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Target: scaffold0204; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 29373 - 29325
Alignment:
Q  270 gctggaaatgatggacaagttccacaaaatgtcagtgttggaaatgttg 318  Q
    ||||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  29373 gctggaaatgatggacaagttgcacaaactgtcaatgtttgaaatgttg 29325  T

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Target: scaffold0204; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 29320 - 29283
Alignment:
Q  308 tggaaatgttgcaattcagggacaaaatgatgtcaatg 345  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  29320 tggaaatgatgcaattcatggacaaaatgatgtcaatg 29283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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