View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_43 (Length: 343)
Name: NF9873_low_43
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 28053644 - 28053330
Alignment:
| Q |
1 |
gaagaggaacatcatgaagaagaaaaactcaacgatcagaagaactacgctaaggagtgtaaagaaagctatgaactacaaacagcgttggcgaagaggc |
100 |
Q |
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| T |
28053644 |
gaagaggaacatcatgaagaagaaaaactcaacgatcagaagaactacgctaaggagtgtaaagaaagctatgaactacaaacagcgttggcgaagaggc |
28053545 |
T |
|
| Q |
101 |
tttctttcttatcaacctttggttcggaaccggttctcacttttgatactggattggaaacctgggatgttgaatcagtttctcgtcgtttatgggtacg |
200 |
Q |
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| T |
28053544 |
tttctttcttatcaacctttggttcagaaccggttctcacttttgatactggattggaaacctgggatgttgaatcagtttctcgtcgtttatgggtacg |
28053445 |
T |
|
| Q |
201 |
atatctaaaccacgtttgtgtatgtttgtgtatctttactgcatgtttgatatcaaggtgtattttgtcggaatcaatgtagatttgtaaaatcatgtga |
300 |
Q |
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||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28053444 |
atatctaaaccacgtttgt----------gtatcttcagtgcatgtttgatatcaaagtgtattttgtcggactcaatgtagatttgtaaaatcatgtga |
28053355 |
T |
|
| Q |
301 |
ttttgtcaatcccaccgtgttacca |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
28053354 |
ttttgtcaatcccaccgtgttacca |
28053330 |
T |
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