View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_44 (Length: 336)
Name: NF9873_low_44
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 42120062 - 42119750
Alignment:
| Q |
1 |
ccctttcgtacgtccaagtgctccttaacgcggttattgtatgtaataataatatatgcatatattagatttcttaaagttgatatttcttttgcgtagg |
100 |
Q |
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| T |
42120062 |
ccctttcgtacgtccaagtcctccttaatgcggttattgtatgtaataataatatatgcatatattagatttcttaaagttgatatttcttttgcgtagg |
42119963 |
T |
|
| Q |
101 |
gccaaactaaaagggcaaaaacgaatgaaaaataaagtttatctttatctttattccaaattccaaccgtgtctttcacgctaggaacttccaacagcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42119962 |
gccaaactaaaagggcaaaaacgaatgaaaaataaagtttatctttatctttattccaaattccaaccgtgtctttcacgctaggaacttccaacagcta |
42119863 |
T |
|
| Q |
201 |
tcaccnnnnnnnnnnnnnnnnnnaattaagaacctctatttactttaaagtgttcacattcatcatataagattggannnnnnnnnnnnggaatgtaaga |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42119862 |
tcacc----ttttttttttttttaattaagaacctctatttactttaaagtgttcacattcatcatataagattggatttttattttttggaatgtaaga |
42119767 |
T |
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| Q |
301 |
ctcaagttttttataca |
317 |
Q |
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||||||||||||||||| |
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| T |
42119766 |
ctcaagttttttataca |
42119750 |
T |
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