View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_low_5 (Length: 548)
Name: NF9873_low_5
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 9338638 - 9338101
Alignment:
| Q |
1 |
gatctagctagagagtaaatcttgcttaattacataagaggtgtgcacaaggnnnnnnnn--ggaaaatttacataa-taagagagttaatatctcaaat |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
9338638 |
gatctagctagagagtaaatcttgcttaattacataagaggtgtatacaaggaaaaaaaaaaggaaaatttacataaataagagagttaatatctcaaat |
9338539 |
T |
|
| Q |
98 |
caataatattatttattacgcatatctcaacactccctgtctaactgcaatgtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggt |
197 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
9338538 |
cagtaatattatttattacgcatatctcaacactccctggctaactgcaacgtacaaataagatgcatcaagtttgtcacatatgcaagtgatcattggt |
9338439 |
T |
|
| Q |
198 |
cctcgaagagacatcatgaagatatgtgttgattgatcaataaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggc |
297 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
9338438 |
acttgaagagacattgtgaagatatgtgttgattgatcattaaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatgac |
9338339 |
T |
|
| Q |
298 |
ggtcgatctcaatatgcttagtttgctcgagtaagactagattaaaggcaatgtgtagggcatcttggttgtcccaaacgatactcatagtacctatttt |
397 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
9338338 |
gatcgatctcaatatgcttagtttgctcgagaaagactagattaaaggcaatgtgtagggcatcttggttgtctcaaacgatactcatagtacctatttt |
9338239 |
T |
|
| Q |
398 |
atataagtgaaacacttggagaagatgattgagctatataaggtcgcatgtagtaagtgttatagctcgatattcagcctctgcacttgatctacaacga |
497 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
9338238 |
atataagtgaaacacttggagaagatggttgagctatataaggtcgcatgtagtaagtgctatagctcgatattcagcctctgcacttgatctacaatga |
9338139 |
T |
|
| Q |
498 |
cattttgattctaactttttcatgaaatcaaattgcct |
535 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||| |
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|
| T |
9338138 |
catttttattccaactttttcatgaaatcaaattgcct |
9338101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 110 - 535
Target Start/End: Original strand, 31837998 - 31838424
Alignment:
| Q |
110 |
ttattacgcatatctcaacactccctgtctaactgcaatgtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagagac |
209 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| | ||||||| | |||||||||| ||||||||| ||||||||||| ||| ||||||||||||| |
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|
| T |
31837998 |
ttattacgcatatctcaacactccccctcaagctggagcatacaaatcatatgcatcaagcttgtcacatatgtaagtgatccttgatcctcgaagagac |
31838097 |
T |
|
| Q |
210 |
atcatgaagatatgtgttgattgatcaataaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcgatctcaa |
309 |
Q |
| |
|
|| ||||||||| | | ||||||| || |||||||||||||| | ||||||||||| ||||||| ||||||| ||||||||| | |||||||||| |
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|
| T |
31838098 |
ttcgtgaagatatcggctagttgatcattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcgatctcaa |
31838197 |
T |
|
| Q |
310 |
tatgcttagtttgctcgagtaagactagattaaaggcaatgtgtagggcatcttggttgtcccaaacgatactcatagtacctattttatataagtgaaa |
409 |
Q |
| |
|
|||||||||||||||| | |||||| ||||| |||||||||||||||| ||| ||||| |||| |||||||||||| ||||||||| ||||| |
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|
| T |
31838198 |
tatgcttagtttgctcatgaaagactggattagaggcaatgtgtagggctggttgattgtcacaaatgatactcatagtgcctattttactgaagtgggg |
31838297 |
T |
|
| Q |
410 |
cacttggagaagatgattgagctatataaggtcgcatgtagtaagtgttatagctcgatattcagcctctgcacttgatcta-caacgacattttgattc |
508 |
Q |
| |
|
| ||||||||||||| |||||| |||| || || |||||| ||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||| ||| |
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|
| T |
31838298 |
ctcttggagaagatgcttgagccatatgagctcacatgtattaagtgtcatagctctatattctgcctctgcacttgatctagcaacgacattttgcttc |
31838397 |
T |
|
| Q |
509 |
taactttttcatgaaatcaaattgcct |
535 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
31838398 |
ttactttttcatgaaatcaaattgcct |
31838424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 110 - 535
Target Start/End: Complemental strand, 13041789 - 13041362
Alignment:
| Q |
110 |
ttattacgcatatctcaacactccctgtctaactgcaatgtacaaa-taagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagaga |
208 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| | |||||| | | |||||||||| ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
13041789 |
ttattacgcatatctcaacactccccctcaagctggagcatacaaaatcatatgcatcaagcttgtcacatatgtaagtgatccttggtcctcgaagaga |
13041690 |
T |
|
| Q |
209 |
catcatgaagatatgtgttgattgatcaataaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcgatctca |
308 |
Q |
| |
|
| || ||||||||| | | ||||||| || |||||||||||||| | ||||||||||| ||||||| ||||||| ||||||||| | ||||||||| |
|
|
| T |
13041689 |
cttcgtgaagatatcggctagttgatcattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcgatctca |
13041590 |
T |
|
| Q |
309 |
atatgcttagtttgctcgagtaagactagattaaaggcaatgtgtagggcatcttggttgtcccaaacgatactcatagtacctattttatataagtgaa |
408 |
Q |
| |
|
|||||||||||| |||| | |||||| ||||| |||||||||||||||| |||| ||||| |||| |||||||||||| ||||||||| || |||| |
|
|
| T |
13041589 |
atatgcttagttcgctcatgaaagactggattagaggcaatgtgtagggctgcttgattgtcacaaatgatactcatagtgcctattttactgaaatgaa |
13041490 |
T |
|
| Q |
409 |
acacttggagaagatgattgagctatataaggtcgcatgtagtaagtgttatagctcgatattcagcctctgcacttgatcta-caacgacattttgatt |
507 |
Q |
| |
|
| ||||||||||||| |||||| |||| || || |||||| |||||| ||||||| |||||| |||||||||||||||||| ||||||||||||| || |
|
|
| T |
13041489 |
gctcttggagaagatgcttgagccatatgagctcacatgtaataagtgccatagctctatattctgcctctgcacttgatctagcaacgacattttgctt |
13041390 |
T |
|
| Q |
508 |
ctaactttttcatgaaatcaaattgcct |
535 |
Q |
| |
|
|| |||||| |||||||||||||||||| |
|
|
| T |
13041389 |
cttacttttccatgaaatcaaattgcct |
13041362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 110 - 535
Target Start/End: Complemental strand, 17727116 - 17726690
Alignment:
| Q |
110 |
ttattacgcatatctcaacactccctgtctaactgcaatgtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagagac |
209 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| | ||||||| | |||||||||| ||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
17727116 |
ttattacgcatatctcaacactccccctcaagctggagcatacaaatcatatgcatcaagcttgtcacatatgtaagtgatccttggtcctcgaagagac |
17727017 |
T |
|
| Q |
210 |
atcatgaagatatgtgttgattgatcaataaaaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcgatctcaa |
309 |
Q |
| |
|
|| ||||||||| | | ||||||| || |||||||||||||| | ||||||||||| ||||||| ||||||| ||||||||| | |||||||||| |
|
|
| T |
17727016 |
ttcgtgaagatatcggctagttgatcattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcgatctcaa |
17726917 |
T |
|
| Q |
310 |
tatgcttagtttgctcgagtaagactagattaaaggcaatgtgtagggcatcttggttgtcccaaacgatactcatagtacctattttatataagtgaaa |
409 |
Q |
| |
|
||||||||||| |||| | |||||| ||||| |||||||||||||||| |||| ||||| |||| ||||||| |||| ||||||||| ||||| | |
|
|
| T |
17726916 |
tatgcttagttcgctcatgaaagactggattagaggcaatgtgtagggctgcttgattgtcgcaaatgatactcctagtgcctattttactgaagtggag |
17726817 |
T |
|
| Q |
410 |
cacttggagaagatgattgagctatataaggtcgcatgtagtaagtgttatagctcgatattcagcctctgcacttgatcta-caacgacattttgattc |
508 |
Q |
| |
|
| ||||||||||||| |||||| |||| || || ||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
17726816 |
ctcttggagaagatgcttgagccatatgagctcacatgtagtaagtgccatagctctatattctgcctctgcacttgatctagcaacgacattttgcttc |
17726717 |
T |
|
| Q |
509 |
taactttttcatgaaatcaaattgcct |
535 |
Q |
| |
|
| |||||| |||||||||||||||||| |
|
|
| T |
17726716 |
ttacttttccatgaaatcaaattgcct |
17726690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 110 - 535
Target Start/End: Original strand, 30591666 - 30592098
Alignment:
| Q |
110 |
ttattacgcatatctcaacactccctgtctaactgcaatgtacaaataagatgcatcaagtttgtcacatgtgtaagtgatcattggtcctcgaagagac |
209 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| | ||||||| | |||||||||| ||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
30591666 |
ttattacgcatatctcaacactccccttcaagctggagcatacaaatcatatgcatcaagcttgtcacatatgcaagtgatccttggtcctcgaagagac |
30591765 |
T |
|
| Q |
210 |
atcatgaagatatgtgttgattgatcaataa------aaccaacaaaagaaatgccaatttcaccatacataatcttctcacaaataaaatggcggtcga |
303 |
Q |
| |
|
| ||||||||| | | ||||||| || |||||||||||||| | ||||||||||| ||||||| ||||||| ||||||||| | |||| |
|
|
| T |
30591766 |
tttgtgaagatatcggctagttgatcattactattagaaccaacaaaagaagtagcaatttcaccagacataattttctcacgaataaaatgacaatcga |
30591865 |
T |
|
| Q |
304 |
tctcaatatgcttagtttgctcgagtaagactagattaaaggcaatgtgtagggcatcttggttgtcccaaacgatactcatagtacctattttatataa |
403 |
Q |
| |
|
||||||||||||||||| |||| | |||||| ||||| |||||||||||||||| |||| ||||| |||| |||||||||||| ||||||||| || |
|
|
| T |
30591866 |
tctcaatatgcttagttcgctcatgaaagactggattagaggcaatgtgtagggctgcttgattgtcacaaatgatactcatagtgcctattttactgaa |
30591965 |
T |
|
| Q |
404 |
gtgaaacacttggagaagatgattgagctatataaggtcgcatgtagtaagtgttatagctcgatattcagcctctgcacttgatcta-caacgacattt |
502 |
Q |
| |
|
||||| | ||||||||||||| |||||| |||| || || ||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
30591966 |
gtgaagctcttggagaagatgcttgagccatatgagctcacatgtagtaagtgccatagctctatattctgcctctgcacttgatctagcaacgacattt |
30592065 |
T |
|
| Q |
503 |
tgattctaactttttcatgaaatcaaattgcct |
535 |
Q |
| |
|
|| |||| |||||| |||||||||||||||||| |
|
|
| T |
30592066 |
tgcttcttacttttccatgaaatcaaattgcct |
30592098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 444 - 535
Target Start/End: Complemental strand, 53990524 - 53990432
Alignment:
| Q |
444 |
catgtagtaagtgttatagctcgatattcagcctctgcacttgatcta-caacgacattttgattctaactttttcatgaaatcaaattgcct |
535 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||||||||||| ||| ||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
53990524 |
catgtagtaagtgccatagctctatattctgcctctgcacttgatctagcaatgacattttgcttcttacttttccatgaaatcaaattgcct |
53990432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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