View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_52 (Length: 298)
Name: NF9873_low_52
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 41679813 - 41679544
Alignment:
| Q |
15 |
agaaaattttctatcaagtgattatagggaaaccaacatttcttggtagtctattgttagatgagaagttttaacaagaaacacaataatattaagtgct |
114 |
Q |
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| T |
41679813 |
agaaaattttctatcaagtgattatagggaaaccaacatttcttggtagtctattgttagatgagaagttttaacaagaaacacaataatattaagtgct |
41679714 |
T |
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| Q |
115 |
agcatgtataacacttacaaataataatcatcactctcc----catatatacgattagtcgaaatttgattagttaaatatcatattcatgatacatttc |
210 |
Q |
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| T |
41679713 |
agcatgtataacacttacaaataataatcatcactctcccatgcatatatacgattagtcgaaatttgattagttaaatatcatattcatgatacatttc |
41679614 |
T |
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| Q |
211 |
ataacttaatttgtttaaactaatgctaatatacaaatcaatgatcaggtactaaggaagaagcatggag |
280 |
Q |
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| T |
41679613 |
ataacttaatttgtttaaactaatgctaatatacaaatcaatgatcaggtactaaggaagaagcatggag |
41679544 |
T |
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