View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_58 (Length: 280)
Name: NF9873_low_58
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 28951042 - 28950780
Alignment:
| Q |
1 |
tgatgtgcccaaacttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggtctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28951042 |
tgatgtgcccaaacttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggtctt |
28950943 |
T |
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| Q |
101 |
aatttcattttactttctaactttttctcttgtttgatgcatggtttggattttggaaatcccgttttatgcatatactactagggagaaaaatcaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28950942 |
aatttcattttactttctaactttttctcttgtttgatgcatggtttggattttggaaatcccgttttatgcatatactactagggagaaaaatcaatta |
28950843 |
T |
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| Q |
201 |
atgat-nnnnnnnnttgatatttgtcttaactctttacttaataaatttagagacaaattaat |
262 |
Q |
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| T |
28950842 |
atgataaaaaaaaattgatatttgtcttaactctttacttaataaatttagagacaaattaat |
28950780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 34832350 - 34832087
Alignment:
| Q |
1 |
tgatgtgcccaaacttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggtctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832350 |
tgatgtgcccaaacttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggtctt |
34832251 |
T |
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| Q |
101 |
aatttcattttactttctaactttttctcttgtttgatgcatggtttggattttggaaatcccgttttatgcatatactactagggagaaaaatcaatta |
200 |
Q |
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| T |
34832250 |
aatttcattttactttctaacttttactcttgtttgatgcatggtttggattttggaaatcccgttttatgcatatactactagggagaaaaatcaatta |
34832151 |
T |
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| Q |
201 |
atgat--nnnnnnnnttgatatttgtcttaactctttacttaataaatttagagacaaattaat |
262 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832150 |
atgataaaaaaaaaattgatatttgtcttaactctttacttaataaatttagagacaaattaat |
34832087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 30505030 - 30505113
Alignment:
| Q |
14 |
cttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggt |
97 |
Q |
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| T |
30505030 |
cttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaatctgctatactcatccagagaaactgccaggt |
30505113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 4234142 - 4234230
Alignment:
| Q |
9 |
ccaaacttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggt |
97 |
Q |
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|||| |||||||| ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||| |||| | | ||||||||| |
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| T |
4234142 |
ccaagcttcatccacttattgatgagttcataccaacgattcaaggagagaatggaatttgttatacacacccagcacaactaccaggt |
4234230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 38886623 - 38886707
Alignment:
| Q |
14 |
cttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggtc |
98 |
Q |
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||||||||| | |||||||| ||||| || || |||||||||||||| |||||||| | ||| |||||||| ||| ||||||||| |
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| T |
38886623 |
cttcatcctttaattgatgaattcatccctactcttgaaggagagaatggaatctgctgtactcatccagagaagttaccaggtc |
38886707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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