View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_62 (Length: 269)
Name: NF9873_low_62
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 34262340 - 34262580
Alignment:
| Q |
19 |
acttaaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagnnnnnnnnnnnctacaaccttaga |
118 |
Q |
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| T |
34262340 |
acttaaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagaaaaaaaaaaactacaaccttaga |
34262439 |
T |
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| Q |
119 |
actaattggtttgaatgaaaatgaacgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34262440 |
actaattggtttgaatgaaaatgaacgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcttg |
34262539 |
T |
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| Q |
219 |
ctgatccattgtatcacaaagaacaatcccttcggtctctg |
259 |
Q |
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| T |
34262540 |
ccgatccattgtatcacaaagaacaatcccttcggtctctg |
34262580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 35621419 - 35621492
Alignment:
| Q |
177 |
ttgattcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaatccctt |
250 |
Q |
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| T |
35621419 |
ttgattcatggcatcatatatagctaattctttcttctcttgttgatccattgtatcacaaagaacaatccctt |
35621492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 37576287 - 37576503
Alignment:
| Q |
22 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagnnnnnnnnnnnctacaaccttagaact |
121 |
Q |
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| T |
37576287 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacacta---aatttaaccaagaaaaaaaataactacaacctt-gaact |
37576382 |
T |
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| Q |
122 |
aattggtttgaatgaaaatgaac-gcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcctgct |
220 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37576383 |
aattggtttgaatgaaaatgaactgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatagagctatttctttcttctcttgct |
37576482 |
T |
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| Q |
221 |
gatccattgtatcacaaagaa |
241 |
Q |
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| T |
37576483 |
gatccattgtaccacaaagaa |
37576503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 37602341 - 37602399
Alignment:
| Q |
201 |
tatttctttcttctcctgctgatccattgtatcacaaagaacaatcccttcggtctctg |
259 |
Q |
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| T |
37602341 |
tatttctctcctctcttgttgatccattgtatcacaaagaacaatccctttagtctctg |
37602399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 37602181 - 37602245
Alignment:
| Q |
22 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaac |
90 |
Q |
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| T |
37602181 |
taaaatgtatcattattaaccctactt-acaag-aaaaagtatatt--ttgaacactactaaatttaac |
37602245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 14544293 - 14544225
Alignment:
| Q |
181 |
ttcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaatccct |
249 |
Q |
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||||||| |||||| | |||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
14544293 |
ttcatggcatcacacaaagctatttctttcttctcttgttgatccattgtatcacaaagaacaatccct |
14544225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 14579288 - 14579358
Alignment:
| Q |
175 |
tcttgattcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaat |
245 |
Q |
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||||||||||||| |||| | | |||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
14579288 |
tcttgattcatggcatcagacatagctatttctttcttctcttgttgatccattgtatcacaaagaacaat |
14579358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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