View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_63 (Length: 267)
Name: NF9873_low_63
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 2175606 - 2175351
Alignment:
| Q |
2 |
cttacaaagataagatagtccttcataatcatggccaccactaaccactctaatctgcacaccaatctttttgctgcatagtatggcttcttgaatttct |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
2175606 |
cttacaaagataagatagtccttcataatcatggccaccactaaccactctaatttgcaccccattctttttgctgcatagtatggcttcttgaatttct |
2175507 |
T |
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| Q |
102 |
gattcatgggaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgtttcactgattccaatacttgtggaaacaatatgg |
201 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
2175506 |
gattcatgggaaggtgtcataatgagaagaggcttgcttgatgaattcaaccatcttggattttgtttcaatgattccaatacttgtggatacaatatgg |
2175407 |
T |
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| Q |
202 |
aggatgagttgataaacagtgtgttttcactggattcagaaaagctactacctatg |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2175406 |
aggatgagttgataaacagtgtgttttcactggattcagaaaagctactacctatg |
2175351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 2151935 - 2151680
Alignment:
| Q |
2 |
cttacaaagataagatagtccttcataatcatggccaccactaaccactctaatctgcacaccaatctttttgctgcatagtatggcttcttgaatttct |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2151935 |
cttacaaagataagatagtccttcataatcatggccaccactaacaaccctaatctgcacaccaatctctttgctgcatagtatggctgattgaatttct |
2151836 |
T |
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| Q |
102 |
gattcatgggaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgtttcactgattccaatacttgtggaaacaatatgg |
201 |
Q |
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| T |
2151835 |
gattcatgagaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgtttcaatgattccaatacttgtggatacaatatgg |
2151736 |
T |
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| Q |
202 |
aggatgagttgataaacagtgtgttttcactggattcagaaaagctactacctatg |
257 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2151735 |
aggatgagttgataaacaatgtgttttcactggattcagaaaagctactacctatg |
2151680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 2196197 - 2195948
Alignment:
| Q |
2 |
cttacaaagataagatagtccttcataatcatggccaccactaaccactctaatctgcacaccaatctttttgctgcatagtatggcttcttgaatttct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2196197 |
cttacaaagataagatagtccttcataatcatggccaccactaacaaccctaatctgcacaccaatctctttgctgcatagtatggctgattgaatttct |
2196098 |
T |
|
| Q |
102 |
gattcatgggaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgtttcactgattccaatacttgtggaaacaatatgg |
201 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
2196097 |
gattcatgagaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgtttcaatgattccaatacttgtggataca------ |
2196004 |
T |
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| Q |
202 |
aggatgagttgataaacagtgtgttttcactggattcagaaaagctactacctatg |
257 |
Q |
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||| ||||||| |||||| ||| |||||| ||||||||||| |||||||| ||||| |
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| T |
2196003 |
agggtgagttggtaaacactgttttttcagtggattcagaatagctactaactatg |
2195948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 2184402 - 2184215
Alignment:
| Q |
70 |
ttttgctgcatagtatggcttcttgaatttctgattcatgggaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgttt |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
2184402 |
ttttgctgcatagtatggcttcttgaatttctgattcatgggaaggtgtcataatgagaagaggcttgcttgatgaattcaaccatcttggattttgttt |
2184303 |
T |
|
| Q |
170 |
cactgattccaatacttgtggaaacaatatggaggatgagttgataaacagtgtgttttcactggattcagaaaagctactacctatg |
257 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2184302 |
cactgattccaatacttgtggatacaatatggaggatgagttgataaacagtgtgttttcactggattcagaaaagctactacctatg |
2184215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 35556894 - 35556646
Alignment:
| Q |
2 |
cttacaaagataagatagtccttcataatcatggccaccactaaccactctaatctgcacaccaatctttttgctgcatagtatggcttcttgaatttct |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
35556894 |
cttacaaagataagatattccttcataatcatggttaccactaacaaccctaatctgcacaccaatctctttgctgcatagtatggctccttgaatttct |
35556795 |
T |
|
| Q |
102 |
gattcatgggaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgtttcactgattccaatacttgtggaaacaatatgg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||| ||| |
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| T |
35556794 |
tattcatgggaaggtgtcataatgagaagaggcttgcttgatgaattcagccatcttggattttgtttcaatgattccaacacttgtggataca------ |
35556701 |
T |
|
| Q |
202 |
aggatgagttgataaacagtgtgttttcactggattcagaaaagctactacctat |
256 |
Q |
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|||||||||||||||||| ||| |||||| ||||||||||| || ||||| |||| |
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| T |
35556700 |
aggatgagttgataaacactgttttttcagtggattcagaatagttactaactat |
35556646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 35538461 - 35538267
Alignment:
| Q |
2 |
cttacaaagataagatagtccttcataatcatggccaccactaaccactctaatctgcacaccaatctttttgctgcatagtatggcttcttgaatttct |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
35538461 |
cttacaaagataagataatccttcataatcatggccaccactaacaaccctaatctgcacaccaatctctttgctgcatagtatggctccttgaatttct |
35538362 |
T |
|
| Q |
102 |
gattcatgggaaggtgtcataatgagaagaggtttgcttgatgagttcacccatcttggattttgtttcactgattccaatacttgtggaaacaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||| |||| |
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| T |
35538361 |
tattcatgggaaggtgtcataatgagaagaggcttgcttgatgaattcagccatcttggattttgtttcaatgattccaacacttgtggatacaa |
35538267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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