View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_65 (Length: 264)
Name: NF9873_low_65
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 53130913 - 53131020
Alignment:
| Q |
152 |
agagagatccttctagggttttctacgagactttacatgaacaaattcccactagtgaaatggcacaaatctggtgagttctcaacggcctattctgcct |
251 |
Q |
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| T |
53130913 |
agagagatccttctagggttttctacgagactttacatgaacaaattcccactagcgaaatggcacaaatctggtgaattctcaacggcctattctgctt |
53131012 |
T |
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| Q |
252 |
atgcttct |
259 |
Q |
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||| |||| |
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| T |
53131013 |
atgtttct |
53131020 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 53130762 - 53130844
Alignment:
| Q |
1 |
caaaggttaagaaagtaaagaaggtttatgatttacctggacaaaaacgtgatccacctgaagaggtttgcataacaatgcac |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53130762 |
caaaggttaagaaagtaaagaaggtttatgatttacctggacaaaaacgtgatccacctgaagaggtttgcataacaatgcac |
53130844 |
T |
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