View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_68 (Length: 255)
Name: NF9873_low_68
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 55245679 - 55245768
Alignment:
| Q |
1 |
ctcttcttcaagcttgaattagccagctcctcacaattactagggtatgtttttgaataagagttatccatgtagtgctatagtgtaatt |
90 |
Q |
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| T |
55245679 |
ctcttcttcaagcttgaattagccagctcctcacaattactagggtatgtttttgaataagagttatccatgtagtgctatagtgtaatt |
55245768 |
T |
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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 55245833 - 55245922
Alignment:
| Q |
159 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgtgctc |
248 |
Q |
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| T |
55245833 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgggctc |
55245922 |
T |
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