View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_71 (Length: 250)

Name: NF9873_low_71
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_71
NF9873_low_71
[»] chr7 (18 HSPs)
chr7 (14-250)||(22759191-22759427)
chr7 (131-202)||(39542221-39542292)
chr7 (131-172)||(1418527-1418568)
chr7 (131-210)||(3836604-3836683)
chr7 (131-172)||(7513667-7513708)
chr7 (132-172)||(529470-529510)
chr7 (131-207)||(6977489-6977565)
chr7 (134-210)||(13960648-13960723)
chr7 (162-209)||(20553174-20553221)
chr7 (131-210)||(28727684-28727763)
chr7 (131-210)||(30751589-30751668)
chr7 (131-210)||(44615025-44615104)
chr7 (131-209)||(8427084-8427162)
chr7 (131-204)||(31341211-31341284)
chr7 (131-180)||(32791666-32791715)
chr7 (131-180)||(40598406-40598455)
chr7 (131-171)||(12234810-12234850)
chr7 (129-169)||(33673188-33673228)
[»] chr8 (16 HSPs)
chr8 (148-210)||(24326101-24326163)
chr8 (131-191)||(2606138-2606198)
chr8 (131-169)||(6526173-6526211)
chr8 (131-204)||(7008675-7008747)
chr8 (141-210)||(30191072-30191141)
chr8 (131-195)||(14926903-14926967)
chr8 (131-167)||(43730867-43730903)
chr8 (131-191)||(44236744-44236804)
chr8 (135-210)||(11569382-11569457)
chr8 (134-204)||(6950398-6950468)
chr8 (130-180)||(27465451-27465501)
chr8 (131-172)||(4560610-4560651)
chr8 (131-168)||(38602439-38602476)
chr8 (131-172)||(43043776-43043817)
chr8 (151-211)||(7918722-7918782)
chr8 (136-204)||(11952303-11952371)
[»] chr2 (15 HSPs)
chr2 (131-204)||(22878174-22878247)
chr2 (131-210)||(787402-787481)
chr2 (131-170)||(15370244-15370283)
chr2 (131-210)||(28803451-28803530)
chr2 (140-209)||(5759505-5759574)
chr2 (131-198)||(6547971-6548038)
chr2 (131-210)||(9996808-9996887)
chr2 (131-210)||(15120253-15120332)
chr2 (131-210)||(18884937-18885016)
chr2 (152-210)||(3067321-3067379)
chr2 (131-172)||(750842-750883)
chr2 (133-210)||(19243603-19243680)
chr2 (135-172)||(38767507-38767544)
chr2 (130-170)||(35809977-35810017)
chr2 (131-207)||(42852623-42852699)
[»] chr6 (22 HSPs)
chr6 (136-210)||(2455880-2455954)
chr6 (131-180)||(12111067-12111116)
chr6 (142-223)||(32848528-32848610)
chr6 (131-204)||(8010433-8010506)
chr6 (131-211)||(20861619-20861699)
chr6 (131-210)||(2460072-2460151)
chr6 (135-170)||(5977039-5977074)
chr6 (131-210)||(7148736-7148815)
chr6 (131-166)||(9202906-9202941)
chr6 (131-210)||(32171304-32171383)
chr6 (139-210)||(32917267-32917338)
chr6 (148-210)||(32976048-32976110)
chr6 (131-168)||(4163265-4163302)
chr6 (131-168)||(4224886-4224923)
chr6 (131-204)||(4308645-4308718)
chr6 (132-161)||(30533910-30533939)
chr6 (134-171)||(31338086-31338123)
chr6 (134-207)||(2732169-2732244)
chr6 (132-172)||(6907493-6907533)
chr6 (141-209)||(8183216-8183284)
chr6 (131-210)||(8420117-8420197)
chr6 (125-161)||(31776187-31776223)
[»] chr5 (18 HSPs)
chr5 (131-197)||(14980592-14980658)
chr5 (142-210)||(32172723-32172791)
chr5 (131-210)||(8651273-8651352)
chr5 (131-172)||(10771809-10771850)
chr5 (131-172)||(14331474-14331515)
chr5 (132-168)||(22209746-22209782)
chr5 (131-210)||(499652-499731)
chr5 (131-210)||(1464941-1465019)
chr5 (131-210)||(8177453-8177532)
chr5 (131-209)||(42181006-42181084)
chr5 (137-210)||(11457168-11457241)
chr5 (131-172)||(17368780-17368821)
chr5 (131-172)||(26004918-26004959)
chr5 (131-172)||(36318882-36318923)
chr5 (131-208)||(40335794-40335871)
chr5 (134-210)||(2568728-2568804)
chr5 (134-210)||(8090006-8090082)
chr5 (131-191)||(41820116-41820176)
[»] chr1 (22 HSPs)
chr1 (130-210)||(4549461-4549541)
chr1 (131-202)||(26679432-26679503)
chr1 (131-172)||(6292600-6292641)
chr1 (131-210)||(5157142-5157221)
chr1 (131-198)||(6659762-6659829)
chr1 (143-206)||(32515374-32515437)
chr1 (131-210)||(41638229-41638308)
chr1 (155-210)||(43371836-43371891)
chr1 (126-172)||(18327062-18327108)
chr1 (132-210)||(29723559-29723637)
chr1 (148-210)||(37272532-37272594)
chr1 (131-168)||(22416832-22416869)
chr1 (135-172)||(32958745-32958782)
chr1 (131-250)||(2035352-2035472)
chr1 (132-172)||(2522704-2522744)
chr1 (132-172)||(10199330-10199370)
chr1 (135-167)||(15515669-15515701)
chr1 (141-197)||(31517671-31517727)
chr1 (131-207)||(33723303-33723379)
chr1 (131-179)||(37241742-37241789)
chr1 (136-204)||(46504144-46504212)
chr1 (131-171)||(51929383-51929423)
[»] chr4 (19 HSPs)
chr4 (131-210)||(7367975-7368054)
chr4 (135-210)||(18628478-18628553)
chr4 (131-175)||(38478817-38478861)
chr4 (131-210)||(6428088-6428167)
chr4 (130-197)||(19429390-19429457)
chr4 (131-210)||(25896854-25896933)
chr4 (131-210)||(27123273-27123352)
chr4 (152-210)||(18011941-18011999)
chr4 (131-209)||(52388285-52388363)
chr4 (132-205)||(1017103-1017176)
chr4 (129-170)||(1312951-1312992)
chr4 (131-172)||(24193640-24193681)
chr4 (131-168)||(27043751-27043788)
chr4 (131-172)||(29126184-29126225)
chr4 (131-172)||(32420979-32421020)
chr4 (133-210)||(39011051-39011127)
chr4 (131-168)||(54426155-54426192)
chr4 (132-204)||(41097179-41097250)
chr4 (131-171)||(53315435-53315475)
[»] chr3 (12 HSPs)
chr3 (135-206)||(22667477-22667548)
chr3 (135-206)||(22724116-22724187)
chr3 (131-171)||(1288770-1288810)
chr3 (131-179)||(43079774-43079822)
chr3 (131-198)||(45590733-45590800)
chr3 (131-209)||(24158437-24158515)
chr3 (131-168)||(584158-584195)
chr3 (131-168)||(24684743-24684780)
chr3 (141-210)||(37273204-37273273)
chr3 (131-202)||(2201213-2201284)
chr3 (131-211)||(3775772-3775852)
chr3 (131-203)||(51130827-51130899)
[»] scaffold0459 (1 HSPs)
scaffold0459 (131-204)||(6622-6695)
[»] scaffold0366 (1 HSPs)
scaffold0366 (131-204)||(6620-6693)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 22759427 - 22759191
Alignment:
Q  14 aggtgagaataccttgagtgatctccattttgaattcaaccagtgtgaagaaatatcctcttgtccaattattgtgccggaaaatctgatgaaccatatg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||  |    
T  22759427 aggtgagaataccttgagtgatctccattttgaattcaaccagtgtgaagaaatatcctcttgtccaattattgtgccagaaaatctgatgaatcat--g 22759330  T
Q  114 tattagaa--agggttatttttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttatt 211  Q
    ||||||||  ||| ||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22759329 tattagaattaggattattttttaattgacttatttgagcttatctactggcataagcactagcgagacagttcgagagagcttatggaaacagcttatt 22759230  T
Q  212 tatttccataatctcttctggatagcttatgaaatcagc 250  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  22759229 tatttccataagctctcctggatagcttatgaaatcagc 22759191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 39542221 - 39542292
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaa 202  Q
    ||||| |||||||||| ||| ||||||||| ||||||||||| |||||||||||   |||||||||||||||    
T  39542221 tttgggttgacttatttgagtttatctactagcataagcacttgcgagacagttttagagagcttatggaaa 39542292  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 1418568 - 1418527
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  1418568 tttggattgacttatttgagcttatctactggcataagcact 1418527  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 3836604 - 3836683
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||| |||||| |||||||||||||||| |||||||| | || || ||| |||||| |||||| ||| |||||||    
T  3836604 tttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaatagcttat 3836683  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 7513708 - 7513667
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  7513708 tttgaattgacttatttgagcttatctactggcataagcact 7513667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 529510 - 529470
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  529510 ttggattgacttatttgagcttatctactggcataaacact 529470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 6977565 - 6977489
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagct 207  Q
    |||||||||||||||| ||| ||||||| ||||||||||| | | ||||  ||| | | ||||||||||||||||||    
T  6977565 tttggattgacttattagagtttatctattggcataagcatttgtgagattgtttgagtgagcttatggaaacagct 6977489  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 13960648 - 13960723
Alignment:
Q  134 ggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||||||| ||||||||| | || |||||||||| |||||||  || | ||||||||||| |||||||||||    
T  13960648 ggattgacttatttgagcttatccattg-cataagcacttgcgagactatttgagagagcttatgaaaacagcttat 13960723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 20553221 - 20553174
Alignment:
Q  162 gcataagcactagcgagacagttcgggagagcttatggaaacagctta 209  Q
    ||||||||||| | ||||| |||| |||||||||||||||||||||||    
T  20553221 gcataagcacttgtgagactgttcaggagagcttatggaaacagctta 20553174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 28727684 - 28727763
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||| ||||||| ||||||||||  || | |||| ||| ||||||| ||| | |||||||||||||||| ||||||    
T  28727684 tttggattaacttatttgagcttatcttttgacctaagaacttgcgagactgtttgagagagcttatggaaacggcttat 28727763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 30751668 - 30751589
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||| |||||||  | ||||||||||| |||||||||| | | ||| ||| |||||||||||| ||||||| ||||    
T  30751668 tttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacagtttat 30751589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 44615025 - 44615104
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||| |||| | ||||||||||||| |||||| |||| || | || |||| |||||||||||| ||||| |||||    
T  44615025 tttggattgccttaattgagcttatctactagcataaccacttgcaaaactgttcaggagagcttatgaaaacaacttat 44615104  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 8427162 - 8427084
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagctta 209  Q
    |||||||||| ||||| |||||||||||||  |||||| ||| | ||||| ||| ||| |||| |||||||||| ||||    
T  8427162 tttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttgggggagcctatggaaacaactta 8427084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 31341284 - 31341211
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||||||||||||||| |||||| |||||| |||||| ||||    |||| ||| ||||||| |||||||||||    
T  31341284 tttggattgacttatttgagcttttctacttgcataaacacttttaagactgtttgggagagtttatggaaaca 31341211  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 32791666 - 32791715
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagac 180  Q
    ||||||||| |||||  ||||||||||||| ||||||||||||| |||||    
T  32791666 tttggattggcttatcagagcttatctactagcataagcactagtgagac 32791715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 40598406 - 40598455
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagac 180  Q
    |||||||||||||||| ||||||||||||| |||| | |||| |||||||    
T  40598406 tttggattgacttatttgagcttatctactagcatgaacacttgcgagac 40598455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 12234810 - 12234850
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcac 171  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  12234810 tttggattgacttagttgagcttatctactggcattagcac 12234850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 33673228 - 33673188
Alignment:
Q  129 tttttggattgacttattcgagcttatctactggcataagc 169  Q
    |||||||||||||| ||| |||||||||||||| |||||||    
T  33673228 tttttggattgactcatttgagcttatctactgacataagc 33673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 24326163 - 24326101
Alignment:
Q  148 gagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||| ||||    
T  24326163 gagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaacagtttat 24326101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 2606198 - 2606138
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggaga 191  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| || || ||| ||||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatcactagtgaaactgtttgggaga 2606138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 6526173 - 6526211
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagc 169  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  6526173 tttggattgacttattcgagcctatctactggcataagc 6526211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 7008747 - 7008675
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||| ||||||||||| ||| ||||||||||||||||||||| | ||||| ||| | |||||||||| ||||||    
T  7008747 tttgaattgacttatttgagtttatctactggcataagcacttgtgagac-gttagagagagcttatagaaaca 7008675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 30191072 - 30191141
Alignment:
Q  141 cttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||| ||| ||||||| ||||||||||||| |  |||| ||| ||||||||||||||||||| |||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttat 30191141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 14926903 - 14926967
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagctt 195  Q
    |||||||||||||||| || ||||| |||||||||||||||| | ||||| ||| | ||||||||    
T  14926903 tttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagctt 14926967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 43730903 - 43730867
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataa 167  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43730903 tttggtttgacttattcgagcttatctactggcataa 43730867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 44236744 - 44236804
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggaga 191  Q
    ||||||||  |||||| ||| ||||||||||||||||||||| | ||||| ||||||||||    
T  44236744 tttggattaccttatttgagtttatctactggcataagcacttgtgagactgttcgggaga 44236804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 11569382 - 11569457
Alignment:
Q  135 gattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||| |||||  |||||||||| ||||||||| |||| | ||||| |||   |||||||||||||||||||||||    
T  11569382 gattggcttatcagagcttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttat 11569457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 6950468 - 6950398
Alignment:
Q  134 ggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    ||||||||||||| ||| |||||||||||||||| || | | ||||  ||| ||||||||||||| |||||    
T  6950468 ggattgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaaca 6950398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 27465501 - 27465451
Alignment:
Q  130 ttttggattgacttattcgagcttatctactggcataagcactagcgagac 180  Q
    |||| |||||||||||| || |||||||| ||||||||||||| |||||||    
T  27465501 ttttagattgacttatttgaacttatctattggcataagcacttgcgagac 27465451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 4560651 - 4560610
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||||||| ||||||||||| || ||||||||||    
T  4560651 tttggattgacttatttgagcttatctattgacataagcact 4560610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 38602476 - 38602439
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  38602476 tttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 43043817 - 43043776
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||||||| || ||||||||| |||||||||||||||    
T  43043817 tttggattgacttgtttgagcttatcaactggcataagcact 43043776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 7918722 - 7918782
Alignment:
Q  151 cttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttatt 211  Q
    |||||||||| |||||| |||| | ||||| ||| ||||||||||||| ||||| ||||||    
T  7918722 cttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttatt 7918782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 11952303 - 11952371
Alignment:
Q  136 attgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||||||||||  |||| ||||||| ||||||| ||| | ||||| |||||||| | ||||||||||||    
T  11952303 attgacttatttaagctgatctactagcataagtacttgagagactgttcgggataacttatggaaaca 11952371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 22878247 - 22878174
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||||||||||||||| ||||||||| |||| |||||||||| | ||||| ||| |||||| ||||||||||||    
T  22878247 tttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaaca 22878174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 787481 - 787402
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||  |||||||||| |||||||||||||||||||| | || || ||| | |||| |||||| |||||||||||    
T  787481 tttggattggattattcgagcatatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttat 787402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 15370244 - 15370283
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagca 170  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  15370244 tttggattgacttatttgagcttatctactggcataagca 15370283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 28803451 - 28803530
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||||| |||||||||||| |||||||||||  | ||||| ||| | |||| | |||||||||| |||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttat 28803530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 5759505 - 5759574
Alignment:
Q  140 acttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagctta 209  Q
    ||||||| ||| ||||||| ||| ||||| ||| | ||||| ||| ||||||||||||||||||||||||    
T  5759505 acttatttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatggaaacagctta 5759574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 6548038 - 6547971
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatg 198  Q
    ||||||||||||||||| |||||||||||| ||||||| ||| | ||||| ||| | | |||||||||    
T  6548038 tttggattgacttattcaagcttatctactagcataagaacttgtgagactgtttgagggagcttatg 6547971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 9996887 - 9996808
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||| |||||||||| ||||||||| ||| ||||||| ||| | ||||| | | |||||||||||| |||||| |||||    
T  9996887 tttggcttgacttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttatagaaacaacttat 9996808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 15120332 - 15120253
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||||| || |||||||||| |||||| || | | ||  | ||| ||||||||||||||||||| |||||    
T  15120332 tttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttat 15120253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 18885016 - 18884937
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||| ||||||||||||| |||||| || |||||| ||| |  || | ||| |||||||||||| ||||||||||||    
T  18885016 tttggatcgacttattcgagcgtatctattgacataagaacttgtaaggctgtttgggagagcttatagaaacagcttat 18884937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 3067321 - 3067379
Alignment:
Q  152 ttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||| |||| ||||||||||   ||||| ||||||||||||||||| |||||||||||    
T  3067321 ttatcaactgacataagcacttctgagaccgttcgggagagcttatgaaaacagcttat 3067379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 750883 - 750842
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||||||| ||||||||||| ||| |||||||||    
T  750883 tttggattgacttatttgagcttatctattggtataagcact 750842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 19243680 - 19243603
Alignment:
Q  133 tggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||| |||| || ||||||||||| |||||||| |   ||||| ||| ||| |||||||| ||||||||||||    
T  19243680 tggattgacatatttgaacttatctactgacataagcatttctgagactgtttgggcgagcttatagaaacagcttat 19243603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 38767507 - 38767544
Alignment:
Q  135 gattgacttattcgagcttatctactggcataagcact 172  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  38767507 gattggcttatacgagcttatctactggcataagcact 38767544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 35810017 - 35809977
Alignment:
Q  130 ttttggattgacttattcgagcttatctactggcataagca 170  Q
    |||| |||||||||||| |||||||||||| ||||||||||    
T  35810017 ttttagattgacttatttgagcttatctaccggcataagca 35809977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 42852623 - 42852699
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagct 207  Q
    ||||||||  |||||| || ||||||| |||||||||||||| | ||||| ||| || ||||| |||| ||||||||    
T  42852623 tttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagcctatgaaaacagct 42852699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 2455954 - 2455880
Alignment:
Q  136 attgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||  |||  | |||||||||||||||| |||||    
T  2455954 attgacttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttat 2455880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 12111116 - 12111067
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagac 180  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  12111116 tttggattgacttatttgagcttatctactagcataagcacttgcgagac 12111067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 32848528 - 32848610
Alignment:
Q  142 ttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat-ttatttccataat 223  Q
    ||||| |||||||||||||| |||||||| | | ||| | ||| ||||||||||||||||| |||||||  ||||||||||||    
T  32848528 ttatttgagcttatctactgacataagcatttgtgagtccgttggggagagcttatggaaatagcttatgatatttccataat 32848610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 8010506 - 8010433
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||||||||||||||  ||||||||||| |||||||| || | | |||||||| | ||||||||||| ||||||    
T  8010506 tttggattgacttatgtgagcttatctattggcataaacatttgtgagacagtccaggagagcttatagaaaca 8010433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 20861619 - 20861699
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttatt 211  Q
    ||||||||| |||||| ||||||| ||||||||||||| |   |||||||  || ||||||||||||| ||||| ||||||    
T  20861619 tttggattgtcttatttgagcttacctactggcataagtatatgcgagactttttgggagagcttatgaaaacatcttatt 20861699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 2460072 - 2460151
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||| ||||||| ||||||||  ||| ||||||| ||| | ||||| ||| | ||||||||||||||||| |||||    
T  2460072 tttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttat 2460151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 5977074 - 5977039
Alignment:
Q  135 gattgacttattcgagcttatctactggcataagca 170  Q
    |||||||||||||||||||||||||| |||||||||    
T  5977074 gattgacttattcgagcttatctactagcataagca 5977039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 7148815 - 7148736
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||| |||||||||| ||||||||||| | ||||||||||| | ||||  |||| | |||||||| ||||||| |||||    
T  7148815 tttggtttgacttatttgagcttatctagtcgcataagcacttgtgagagtgttcagcagagcttacggaaacaacttat 7148736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 9202906 - 9202941
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcata 166  Q
    |||||||||||||||| |||||||||||||||||||    
T  9202906 tttggattgacttatttgagcttatctactggcata 9202941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 32171304 - 32171383
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||| ||||||  ||||||  || || |||||||||| ||||||| ||| | ||||||||||| |||||||||||    
T  32171304 tttggattgtcttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttat 32171383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 32917338 - 32917267
Alignment:
Q  139 gacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||| ||||||| ||||| | |||| |||| | ||||| ||| ||||||||||||||||||| |||||    
T  32917338 gacttattagagcttacctactagaataaacacttgtgagactgtttgggagagcttatggaaacaacttat 32917267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 32976110 - 32976048
Alignment:
Q  148 gagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||| |||||||||||| ||| | ||||| ||| || ||||||||| ||||||||||||    
T  32976110 gagcttatttactggcataagtacttgtgagactgtttggaagagcttatagaaacagcttat 32976048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 4163302 - 4163265
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  4163302 tttggattggcttatttgagcttatctactggcataag 4163265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 4224923 - 4224886
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  4224923 tttggattggcttatttgagcttatctactggcataag 4224886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 4308718 - 4308645
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||| ||||||||||| ||| | || |||||||||||||||||| || || ||| |||||| |||||| |||||    
T  4308718 tttgaattgacttatttgagttaatttactggcataagcactagtgacactgtttgggagaacttatgaaaaca 4308645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 30533939 - 30533910
Alignment:
Q  132 ttggattgacttattcgagcttatctactg 161  Q
    ||||||||||||||||||||||||||||||    
T  30533939 ttggattgacttattcgagcttatctactg 30533910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 31338123 - 31338086
Alignment:
Q  134 ggattgacttattcgagcttatctactggcataagcac 171  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  31338123 ggattgacttatttgagcttatctactagcataagcac 31338086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 2732169 - 2732244
Alignment:
Q  134 ggattgacttattcgag--cttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagct 207  Q
    ||||||||||||| |||  ||| ||||||| |||||||||| | ||||| ||| || | |||||||||||||||||    
T  2732169 ggattgacttatttgagagcttgtctactgacataagcacttgtgagactgtttggaaaagcttatggaaacagct 2732244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 6907493 - 6907533
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  6907493 ttggattgacttattagagcttatttgctggcataagcact 6907533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 8183284 - 8183216
Alignment:
Q  141 cttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagctta 209  Q
    |||||| |||| |||||||| || |||||||| | || || |||| |||||||||||| ||||||||||    
T  8183284 cttatttgagcatatctactagcgtaagcacttgggatactgttccggagagcttatgaaaacagctta 8183216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 8420117 - 8420197
Alignment:
Q  131 tttggattgactt-attcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||||||| ||| ||||||||||| || ||||| |||| | ||||| ||| | |||||||||| |||| |||||||    
T  8420117 tttggattgactttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttat 8420197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 31776187 - 31776223
Alignment:
Q  125 gttatttttggattgacttattcgagcttatctactg 161  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  31776187 gttatgtttggattgacttatttgagcttatctactg 31776223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 14980658 - 14980592
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttat 197  Q
    |||||| ||||||||| ||||||||||||||||||||||||||  ||||| ||| | ||||||||||    
T  14980658 tttggaatgacttatttgagcttatctactggcataagcactatagagactgtttgagagagcttat 14980592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 32172791 - 32172723
Alignment:
Q  142 ttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||| |||||||| |||| ||||||||||| | |||| |||| ||||||||||||||||||| |||||    
T  32172791 ttatttgagcttatatactagcataagcacttgtgagatagtttgggagagcttatggaaacaacttat 32172723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 8651273 - 8651352
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||| |||||| |||||||||| || |||||| |||| | ||||   ||||| ||||||||||||||||||||||    
T  8651273 tttggattgccttatttgagcttatcttctagcataaacactcgtgagagtattcggaagagcttatggaaacagcttat 8651352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 10771809 - 10771850
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  10771809 tttggattggcttatttgagcttatctactggcataagcact 10771850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 14331515 - 14331474
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  14331515 tttggattgacttatttgagcttatctactgtcataagcact 14331474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 22209746 - 22209782
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataag 168  Q
    ||||||||||||||| |||||||||||||||||||||    
T  22209746 ttggattgacttatttgagcttatctactggcataag 22209782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 499652 - 499731
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||||| ||||||| |||||| |||||||||  |  || | ||| |||||| |||||| |||||||||||    
T  499652 tttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaacagcttat 499731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 1464941 - 1465019
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||| ||||||||||| ||||||| || || |||||||  || ||||||| |||||||||| |||||| |||||||||||    
T  1464941 tttgaattgacttatttgagcttagcttctagcataagttct-gcgagactgttcgggagaacttatgaaaacagcttat 1465019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 8177453 - 8177532
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||| |||||| || |||||||   |||||||||||| |  |||| |||||| |||||| |||||||||||||||    
T  8177453 tttggattggcttatttgaacttatctttcggcataagcacttgatagaccgttcggaagagctcatggaaacagcttat 8177532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 42181006 - 42181084
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagctta 209  Q
    |||||||||||| ||| || ||||| |||| ||||| ||| | | |||||| || ||||||||||||||||| ||||||    
T  42181006 tttggattgactaatttgaacttatttactagcatatgcatttgtgagacaatttgggagagcttatggaaatagctta 42181084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 11457241 - 11457168
Alignment:
Q  137 ttgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||| ||||||||||| ||||| || |||| | ||||| |||  | |||||||||||||||| |||||    
T  11457241 ttgacttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttat 11457168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 17368821 - 17368780
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||||||||||  | ||||||||||||||||||||||    
T  17368821 tttggattgacttatttaaacttatctactggcataagcact 17368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 26004918 - 26004959
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||||||||||  |||||||||||| |||||||||||    
T  26004918 tttggattgacttattttagcttatctactagcataagcact 26004959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 36318923 - 36318882
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  36318923 tttggattgtcttattttagcttatctactggcataagcact 36318882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 40335794 - 40335871
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagctt 208  Q
    |||||||||||||||| ||| ||||||||| ||| || |||| | ||||| ||| || |||| ||||||||| |||||    
T  40335794 tttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttggtagagtttatggaaagagctt 40335871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 2568804 - 2568728
Alignment:
Q  134 ggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||| |||  | ||| |||||| |||||||||||    
T  2568804 ggattgtcttatttgagcttatctactggtgtaagcacttgagagactgtttagaagaacttatgaaaacagcttat 2568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 8090082 - 8090006
Alignment:
Q  134 ggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||||||| || ||||||||||  || ||||||| |||||||  || | ||||||||||| ||||| |||||    
T  8090082 ggattgacttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttatgaaaacaacttat 8090006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 41820176 - 41820116
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggaga 191  Q
    |||| |||| |||||| ||||||||| || |||||||||||| | ||||| ||||||||||    
T  41820176 tttgaattggcttatttgagcttatccacgggcataagcacttgagagactgttcgggaga 41820116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 4549461 - 4549541
Alignment:
Q  130 ttttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||| |||||| ||| ||||||||||||||||||| |   ||||| ||| |||||||||||| |||||| |||||    
T  4549461 ttttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttat 4549541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 26679503 - 26679432
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaa 202  Q
    |||||||||| ||||| |||||||||||||| ||| |||||| |  |||||||| | |||||||||||||||    
T  26679503 tttggattgatttatttgagcttatctactgtcattagcactggtaagacagtttgcgagagcttatggaaa 26679432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 6292641 - 6292600
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  6292641 tttggattgacttatttgagcttatctactgacataagcact 6292600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 5157221 - 5157142
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||||| || ||||||||| | ||||| |||| | || || ||| |||||||||||| |||||| |||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttat 5157142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 6659829 - 6659762
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatg 198  Q
    ||||||||||||||||  |||||||||||| ||||||||||| | |||||  || |||| ||||||||    
T  6659829 tttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttatg 6659762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 32515374 - 32515437
Alignment:
Q  143 tattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagc 206  Q
    |||| ||| |||||||||  |||||||||| | ||||| ||| |||||||||||||||||||||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagc 32515437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 41638229 - 41638308
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||| |||| | |||| |||||||||||||||||| | | ||||| ||| ||||||| ||||| |||||| ||||    
T  41638229 tttggattgtcttaattgagcctatctactggcataagcatttgtgagactgtttgggagagattatgaaaacagtttat 41638308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 43371836 - 43371891
Alignment:
Q  155 tctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||||||| | ||||| ||| | ||||||||||| |||||||||||    
T  43371836 tctactggcataagcacttgtgagactgtttgagagagcttatgaaaacagcttat 43371891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 18327062 - 18327108
Alignment:
Q  126 ttatttttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||| ||||||||| |||||| |||||||||||||| ||||||||||    
T  18327062 ttatatttggattggcttatttgagcttatctactgtcataagcact 18327108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 29723637 - 29723559
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||||||| ||| |||||||| |||| ||||||||||| | || |||||| |  ||| || |||||||||||||||    
T  29723637 ttggattgactaatttgagcttatttactagcataagcacttgtgatacagtttgaaagaactaatggaaacagcttat 29723559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 37272532 - 37272594
Alignment:
Q  148 gagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||||| |||||||| | ||||  ||| | ||||||||||||| |||||||||    
T  37272532 gagcttatctactggcttaagcacttgtgagattgtttgagagagcttatggagacagcttat 37272594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 22416832 - 22416869
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  22416832 tttggattggcttatttgagcttatctactggcataag 22416869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 32958782 - 32958745
Alignment:
Q  135 gattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  32958782 gattgacttatttgagcttatctactgtcataagcact 32958745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 2035352 - 2035472
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat-ttatttccataatctcttc 229  Q
    |||||||||| |||||  || |||| |||||||||||||| | | ||||| ||||  |||| |||||| ||| |||||||   || ||||||| |||  |    
T  2035352 tttggattgaattatttaagattatatactggcataagcatttgagagactgttcaagagaacttatgaaaatagcttatgacatatccataagctcacc 2035451  T
Q  230 tggatagcttatgaaatcagc 250  Q
    |||||||||||||||| ||||    
T  2035452 tggatagcttatgaaaacagc 2035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 2522744 - 2522704
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||||||||| ||| |||||||||||||||| ||||    
T  2522744 ttggattgacttatttgagtttatctactggcataaacact 2522704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 10199330 - 10199370
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||||||||| |||||||||||||  ||||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcact 10199370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 15515701 - 15515669
Alignment:
Q  135 gattgacttattcgagcttatctactggcataa 167  Q
    |||||||||||| ||||||||||||||||||||    
T  15515701 gattgacttatttgagcttatctactggcataa 15515669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 31517671 - 31517727
Alignment:
Q  141 cttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttat 197  Q
    |||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttat 31517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 33723303 - 33723379
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagct 207  Q
    |||||||||||||||| || ||||||||||  ||||| |||| | ||||| | | |||| | |||||||||||||||    
T  33723303 tttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagct 33723379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 37241742 - 37241789
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgaga 179  Q
    ||||||||||||||||  |||||||||||| ||||||||||| ||||||    
T  37241742 tttggattgacttatttaagcttatctact-gcataagcacttgcgaga 37241789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 46504144 - 46504212
Alignment:
Q  136 attgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    ||||||||||| ||| |||||||| |||||||| | | | ||||| |||||| |||||||||| |||||    
T  46504144 attgacttatttgagtttatctaccggcataagtatttgtgagactgttcggtagagcttatgaaaaca 46504212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 51929383 - 51929423
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcac 171  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataagcac 51929423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 7367975 - 7368054
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||||| ||| |||||||| ||||||| | || | ||||| ||| ||||||||| ||| |||||||||||    
T  7367975 tttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttat 7368054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 18628478 - 18628553
Alignment:
Q  135 gattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||||| |||| |||||||||||||| ||||| |||| | ||||| ||| ||||||||||||| ||||| |||||    
T  18628478 gattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 38478861 - 38478817
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagc 175  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||    
T  38478861 tttggattggcttatttgagcatatctactggcataagcactagc 38478817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 6428167 - 6428088
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||| ||||||||||| |||||||| || ||| ||||||||| | ||||||||| | ||||| ||||| ||||| |||||    
T  6428167 tttgaattgacttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaacttat 6428088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 19429390 - 19429457
Alignment:
Q  130 ttttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttat 197  Q
    |||||||||| |||||| |||||||| |||||| |||| |||| | ||||| ||| ||||||||||||    
T  19429390 ttttggattggcttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttat 19429457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 25896933 - 25896854
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||| ||||||| ||| ||||||||| |||| |||||| | ||||| |||  ||||||||||| |||| |||||||    
T  25896933 tttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttatagaaatagcttat 25896854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 27123273 - 27123352
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||| ||||||| ||||||||  ||| ||||||| ||| | ||||| ||| | ||||||||||||||||| |||||    
T  27123273 tttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttat 27123352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 18011999 - 18011941
Alignment:
Q  152 ttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    ||||| |||| ||||||||||   ||||| ||||||||||||||||| |||||||||||    
T  18011999 ttatcaactgacataagcacttctgagaccgttcgggagagcttatgaaaacagcttat 18011941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 52388363 - 52388285
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagctta 209  Q
    |||||||||||||||| |||   ||||||||||||||||||  | || |  ||| ||||||||||||||||| ||||||    
T  52388363 tttggattgacttatttgagtccatctactggcataagcacatgtgaaattgtttgggagagcttatggaaatagctta 52388285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 1017176 - 1017103
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacag 205  Q
    ||||||||||||||| ||||| |||||||| ||||| |||| | ||||| ||| || ||| ||||| |||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttggaagaacttatagaaacag 1017103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 1312992 - 1312951
Alignment:
Q  129 tttttggattgacttattcgagcttatctactggcataagca 170  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  1312992 tttttggattgacttatttgcacttatctactggcataagca 1312951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 24193681 - 24193640
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||||||| |||||||||| ||||||||| ||||    
T  24193681 tttggattgacttatttgagcttatctcctggcataaacact 24193640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 27043751 - 27043788
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  27043751 tttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 29126184 - 29126225
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    ||||||||| |||||| |||||||||||| ||||||||||||    
T  29126184 tttggattggcttatttgagcttatctaccggcataagcact 29126225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 32420979 - 32421020
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcact 172  Q
    |||||||||||||||| ||||||| ||||| |||||||||||    
T  32420979 tttggattgacttatttgagcttacctactagcataagcact 32421020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 39011051 - 39011127
Alignment:
Q  133 tggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||||||||||| |||||||||| | |||||||| | | | ||||||||| |||||| | |||| |||||||||||    
T  39011051 tggattgacttatttgagcttatcttcgggcataagta-tcgtgagacagtttgggagaacatatgaaaacagcttat 39011127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 54426192 - 54426155
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  54426192 tttggattggcttatttgagcttatctactggcataag 54426155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 41097179 - 41097250
Alignment:
Q  132 ttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    ||||||||| ||||| || |||||||| || || ||||||| | ||||| |||||||||||||||| ||||||    
T  41097179 ttggattgagttatttgaacttatcta-tgtcaaaagcacttgtgagactgttcgggagagcttatagaaaca 41097250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 53315475 - 53315435
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcac 171  Q
    |||||||||||||||| ||||||||| ||||| ||||||||    
T  53315475 tttggattgacttatttgagcttatccactggtataagcac 53315435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 22667548 - 22667477
Alignment:
Q  135 gattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagc 206  Q
    ||||| |||||| |||||||||||||| |||||||||| | ||||| ||| | ||||| |||||||||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22667477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 22724187 - 22724116
Alignment:
Q  135 gattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagc 206  Q
    ||||| |||||| |||||||||||||| |||||||||| | ||||| ||| | ||||| |||||||||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22724116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 1288770 - 1288810
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcac 171  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  1288770 tttggattgacttatttgagcttatcaactggcataagcac 1288810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 43079822 - 43079774
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgaga 179  Q
    ||||||||||||||||| ||||||  |||||||||||||||||| ||||    
T  43079822 tttggattgacttattctagcttaaatactggcataagcactagtgaga 43079774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 45590800 - 45590733
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatg 198  Q
    |||| |||||||| || || |||||||||| ||||||||||| | ||||| ||| |||||||||||||    
T  45590800 tttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatg 45590733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 24158437 - 24158515
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagctta 209  Q
    ||||||||| ||||||  ||||||||||||| |||||| ||| | || || ||| | ||||||||||||||||| ||||    
T  24158437 tttggattggcttatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttatggaaacaactta 24158515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 584195 - 584158
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  584195 tttggattgacttatttgagcttatctactagcataag 584158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 24684743 - 24684780
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataag 168  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  24684743 tttggattaacttatttgagcttatctactggcataag 24684780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 37273273 - 37273204
Alignment:
Q  141 cttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttat 210  Q
    |||||| || ||||| || | ||||||||||| | ||||| ||| ||||||||||||||||||| |||||    
T  37273273 cttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttat 37273204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 2201284 - 2201213
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcac-tagcgagacagttcgggagagcttatggaaa 202  Q
    ||||||||||||||||| || |||| ||||| ||||||||| ||| || || ||| |||||||||||||||||    
T  2201284 tttggattgacttattcaagattatttactgccataagcacataggga-actgtttgggagagcttatggaaa 2201213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 3775772 - 3775852
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaacagcttatt 211  Q
    ||||||||| |||||| ||| |||||||||||||||| || | |  |||| ||| || ||||||||| |||||| ||||||    
T  3775772 tttggattgccttatttgagtttatctactggcataaacaattgttagactgtttggcagagcttatagaaacaacttatt 3775852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 51130899 - 51130827
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaac 203  Q
    |||||||||||||||| ||||| |||| |||||||||| | | |||| |  ||| ||||||||||||| ||||    
T  51130899 tttggattgacttatttgagctcatctgctggcataagtagttgcgaaattgtttgggagagcttatgaaaac 51130827  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 6695 - 6622
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||||||||||||||| |||||||| || ||| |||| |||| | ||||||||| | ||||| ||||| |||||    
T  6695 tttggattgacttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatgaaaaca 6622  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 6693 - 6620
Alignment:
Q  131 tttggattgacttattcgagcttatctactggcataagcactagcgagacagttcgggagagcttatggaaaca 204  Q
    |||||||||||||||| |||||||| || ||| |||| |||| | ||||||||| | ||||| ||||| |||||    
T  6693 tttggattgacttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatgaaaaca 6620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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