View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_78 (Length: 247)

Name: NF9873_low_78
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_78
NF9873_low_78
[»] chr3 (12 HSPs)
chr3 (1-236)||(2808861-2809096)
chr3 (1-240)||(2820150-2820389)
chr3 (1-228)||(2760816-2761043)
chr3 (1-236)||(2854122-2854357)
chr3 (78-236)||(2791908-2792066)
chr3 (13-236)||(2770654-2770877)
chr3 (90-236)||(2750589-2750735)
chr3 (100-234)||(2798957-2799091)
chr3 (13-236)||(2836924-2837147)
chr3 (11-228)||(5414487-5414704)
chr3 (112-164)||(3355786-3355838)
chr3 (112-164)||(3723126-3723178)
[»] chr5 (1 HSPs)
chr5 (44-182)||(31681562-31681700)
[»] scaffold0691 (1 HSPs)
scaffold0691 (20-236)||(4480-4696)
[»] chr1 (1 HSPs)
chr1 (92-236)||(11116152-11116296)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2809096 - 2808861
Alignment:
Q  1 aggcaatgtatctagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2809096 aggcaatgaatctagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtg 2808997  T
Q  101 atattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2808996 atattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgcc 2808897  T
Q  201 ctaacattttaatctcttgaatgagatctacccccc 236  Q
    |||||||||| |||||||||||||||||||||||||    
T  2808896 ctaacattttcatctcttgaatgagatctacccccc 2808861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2820389 - 2820150
Alignment:
Q  1 aggcaatgtatctagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtg 100  Q
    |||||||||||||| | | |||||||||||||| ||  |||| ||| ||||| | ||||| || ||||||||||| |||||||| ||||| || ||||||    
T  2820389 aggcaatgtatctaatctggctttcaaatgaagccgctgaagttggtgtggatatgagacaaaattcaagttaatggtttcatcctcaccaatggtagtg 2820290  T
Q  101 atattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgcc 200  Q
    |||||||||| ||||||||||||||||||||||||  |||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||     
T  2820289 atattaagatcttcaaggtgtttcatttctactataacagcacttaaggcatccccatgttctcttcttacatgccttaaacctaacctccttaactgct 2820190  T
Q  201 ctaacattttaatctcttgaatgagatctacccccctatg 240  Q
     ||||||||| ||||| | ||||||||| || ||||||||    
T  2820189 ttaacattttcatctcgttaatgagatcgactcccctatg 2820150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2761043 - 2760816
Alignment:
Q  1 aggcaatgtatctagtttagctttcaaatgaagtcgtc-gaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagt 99  Q
    ||||||||||||||||||||||||||||||||| || | |||| ||||| ||||| ||||| || |||||||||||  ||||||| ||||| ||||||||    
T  2761043 aggcaatgtatctagtttagctttcaaatgaag-cgcctgaagttggggcggagatgagacaaaattcaagttaatgctttcatcctcaccaattgtagt 2760945  T
Q  100 gatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgc 199  Q
    ||||||||||| |||||||||||||| |||||||||  |||||| || ||| | |||||| |||||||| |||||||||||||||||||| ||||||||     
T  2760944 gatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactga 2760845  T
Q  200 cctaacattttaatctcttgaatgagatc 228  Q
    | ||||||||| |||||||||||||||||    
T  2760844 cttaacattttcatctcttgaatgagatc 2760816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2854122 - 2854357
Alignment:
Q  1 aggcaatgtatctagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtg 100  Q
    ||||||||||||||||||||||||||||||||| || | ||| |  ||||| |  ||  | ||||| |||| |||  ||||||| ||  |||||| ||||    
T  2854122 aggcaatgtatctagtttagctttcaaatgaagccgcctaagttttggtggggttgacgcaaagtttaagtcaataatttcatcctctgctattgcagtg 2854221  T
Q  101 atattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgcc 200  Q
    ||||||||   ||||||||||| ||| ||| ||| |||||||| || ||| | ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  2854222 atattaagtgattcaaggtgttgcatctcttctactgcagcacttatggcctccccatgttctcttcttacatgccttaaacctaaccttcttaactgcc 2854321  T
Q  201 ctaacattttaatctcttgaatgagatctacccccc 236  Q
     ||||||||| |||||||||||||||||||||||||    
T  2854322 ttaacattttcatctcttgaatgagatctacccccc 2854357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 2792066 - 2791908
Alignment:
Q  78 tttcatcttcacctattgtagtgatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgcct 177  Q
    ||||||| |||  ||||| || ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| || || ||    
T  2792066 tttcatcctcagatattgcagagatattaagatattcaaggtgtttcatttctgctactgcagcacataaggcattcccatgttctcgtcttacttgact 2791967  T
Q  178 taaacctaacctccttaactgccctaacattttaatctcttgaatgagatctacccccc 236  Q
    ||| ||||||||||||||||||| || |||||| |||||||||||||||||||| ||||    
T  2791966 taagcctaacctccttaactgccttagcattttcatctcttgaatgagatctactcccc 2791908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 2770877 - 2770654
Alignment:
Q  13 tagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtgatattaagattt 112  Q
    |||| ||||||||||||| || ||  |||| |||||||| || || |   ||||||||| || | ||||||| |||  ||||| |  ||||||||||| |    
T  2770877 tagtctagctttcaaatgtagccgcagaagttggggtggggatgatatacagttcaagtcaagtatttcatcctcagatattgcacagatattaagatgt 2770778  T
Q  113 tcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgccctaacattttaa 212  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||| ||  ||||||| ||||||||||||||||||| || |||||| |    
T  2770777 tcaaggtgtttcatttctgctactgcagcacataaggcgttcccatgttctcgtcttactcgccttaagcctaacctccttaactgccttagcattttca 2770678  T
Q  213 tctcttgaatgagatctacccccc 236  Q
    ||||||||||||||| ||| ||||    
T  2770677 tctcttgaatgagatatacgcccc 2770654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 2750735 - 2750589
Alignment:
Q  90 ctattgtagtgatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacct 189  Q
    |||||| ||||||||||||   ||||||||||| ||| |||  || |||||||| || ||||||||||||||| ||||| |||||| ||||||||||| |    
T  2750735 ctattgcagtgatattaagtgattcaaggtgttgcatctcttgtactgcagcacttatggcattcccatgttcccttcttacatgctttaaacctaactt 2750636  T
Q  190 ccttaactgccctaacattttaatctcttgaatgagatctacccccc 236  Q
    ||||||||||| || |||||| ||||||| |||||||||||| ||||    
T  2750635 ccttaactgccttagcattttcatctcttcaatgagatctactcccc 2750589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 2799091 - 2798957
Alignment:
Q  100 gatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgc 199  Q
    |||||| ||||||||||||||| |||||||| |||  ||||||| ||||| |||||||||||||| ||| ||||||||||||||| | |||||||| | |    
T  2799091 gatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctgaactccttaaattc 2798992  T
Q  200 cctaacattttaatctcttgaatgagatctacccc 234  Q
    | || |||||| || |||||||||||||| |||||    
T  2798991 cttagcattttcatttcttgaatgagatcaacccc 2798957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 2836924 - 2837147
Alignment:
Q  13 tagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtgatattaagattt 112  Q
    |||| |||||||||||||||| || | ||| |  ||||| |  || || |||||||||| |||  ||||||| || | ||||| ||||||||||||   |    
T  2836924 tagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaagttcaagtcaataatttcatcctcgcatattgcagtgatattaagtgat 2837023  T
Q  113 tcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgccctaacattttaa 212  Q
    |||||||| | ||| | | ||| ||| |||| |||||||||||||||||||||| | |||||||||||||||||| ||| ||| |||| ||||||||  |    
T  2837024 tcaaggtgctgcatcttttctactgctgcacttaaggcattcccatgttctctttttacatgccttaaacctaacttccataattgccttaacatttcca 2837123  T
Q  213 tctcttgaatgagatctacccccc 236  Q
    |||||| ||| |||||||| ||||    
T  2837124 tctcttcaataagatctactcccc 2837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 5414704 - 5414487
Alignment:
Q  11 tctagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtgatattaagat 110  Q
    |||||| |||||||||||||||| || ||||| |  || || |  || || ||||| |||| |||  ||||||| ||  |||||| ||||||||||||      
T  5414704 tctagtctagctttcaaatgaagccgacgaagttttggcggggttgacacaaagtttaagtcaataatttcatcctcggctattgcagtgatattaagtg 5414605  T
Q  111 tttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgccctaacatttt 210  Q
     |||||||| || ||| ||||||| |||  ||| || ||||||||| ||||||||||| |||||| ||||||| ||| |||||||||||   | ||| ||    
T  5414604 attcaaggtattgcatctctactactgccacacttatggcattcccgtgttctcttcttacatgctttaaacccaacttccttaactgcttaagcatctt 5414505  T
Q  211 aatctcttgaatgagatc 228  Q
     ||||||| |||||||||    
T  5414504 catctcttcaatgagatc 5414487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 3355786 - 3355838
Alignment:
Q  112 ttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctc 164  Q
    ||||||||||||||| |||  ||||||||||||||| ||||| |||| |||||    
T  3355786 ttcaaggtgtttcatctcttgtattgcagcacataatgcatttccatattctc 3355838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 3723178 - 3723126
Alignment:
Q  112 ttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctc 164  Q
    ||||||||||||||| |||  ||||||||||||||| ||||| |||| |||||    
T  3723178 ttcaaggtgtttcatctcttgtattgcagcacataatgcatttccatattctc 3723126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 31681700 - 31681562
Alignment:
Q  44 tggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtgatattaagattttcaaggtgtttcatttctactattgcagcac 143  Q
    |||||||| || |||||  ||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  31681700 tggggtggcgatgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtgtttcgtttctacgattgctgcac 31681601  T
Q  144 ataaggcattcccatgttctcttctcacatgccttaaac 182  Q
    ||| ||||||||| ||||||||||| |||||||||||||    
T  31681600 atacggcattcccgtgttctcttcttacatgccttaaac 31681562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 4480 - 4696
Alignment:
Q  20 gctttcaaatgaagtcgtcgaagctggggtggagacgagacgaagttcaagttaattgtttcatcttcacctattgtagtgatattaagattttcaaggt 119  Q
    |||||||||||||||||  |||| | |||||| || || || ||||| |||| |||  ||||||| ||  |||||| ||||||||||||   ||||||||    
T  4480 gctttcaaatgaagtcgctgaagtttgggtggggatgacacaaagtttaagtcaataatttcatcctctgctattgcagtgatattaagtgattcaaggt 4579  T
Q  120 gtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctccttaactgccctaacattttaatctcttg 219  Q
    ||| ||| ||||||| ||| |||| ||||||||  | |||||||||||| |||||||||||||||||| |||||||||||| ||  ||||| |||||||     
T  4580 gttgcatctctactaatgccgcacttaaggcatggctatgttctcttcttacatgccttaaacctaacttccttaactgccttagtattttcatctcttc 4679  T
Q  220 aatgagatctacccccc 236  Q
    |||||||||||| ||||    
T  4680 aatgagatctactcccc 4696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 11116152 - 11116296
Alignment:
Q  92 attgtagtgatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctcttctcacatgccttaaacctaacctcc 191  Q
    |||| ||||||||||||   ||||||||||| ||| ||| |||||||||||| ||| |||||| || |||||||| ||||| |||||||||||||| | |    
T  11116152 attgcagtgatattaagtgattcaaggtgttgcatctcttctattgcagcacttaatgcattcacaagttctcttttcacacgccttaaacctaactttc 11116251  T
Q  192 ttaactgccctaacattttaatctcttgaatgagatctacccccc 236  Q
    ||||||||| ||||||||| |||||||  || |||||||| ||||    
T  11116252 ttaactgccttaacattttcatctcttctataagatctactcccc 11116296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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