View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_79 (Length: 245)
Name: NF9873_low_79
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 32252665 - 32252542
Alignment:
| Q |
1 |
aatctcagtaaaacaatcacaatatcaataaaacaatgcatgctatgcaatgcaataatgaggtggcatgatgtactgtagccaagaacttcagttcttg |
100 |
Q |
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| T |
32252665 |
aatctcagtaaaacaatcacaatatcaataaaacaatgcatgctatgcaatgcaataatgaggtggcatgatgtactgtagccaagaacttcagttcttg |
32252566 |
T |
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| Q |
101 |
aaataattaatataaatgaaaaag |
124 |
Q |
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| T |
32252565 |
aaataattaatataaatgaaaaag |
32252542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32247915 - 32247850
Alignment:
| Q |
1 |
aatctcagtaaaacaatcacaatatcaataaaacaatgcatgctatgcaatgcaataatgaggtggc |
67 |
Q |
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| T |
32247915 |
aatcttagtaaaacaatcacaatctcaataaaacaatgcatgctatgcaatgcaat-atgaggtggc |
32247850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 32247817 - 32247774
Alignment:
| Q |
72 |
tgtactgtagccaagaacttcagttcttgaaataattaatataa |
115 |
Q |
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| T |
32247817 |
tgtactgtagccaagaacttcagttcttgaaataatcaatataa |
32247774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 32252476 - 32252437
Alignment:
| Q |
190 |
taatatgaacattatatatcttgtagacgatatctctaac |
229 |
Q |
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| T |
32252476 |
taatatgaacattatatatcttgtagacgatatctctaac |
32252437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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