View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_80 (Length: 244)

Name: NF9873_low_80
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_80
NF9873_low_80
[»] chr2 (8 HSPs)
chr2 (1-226)||(5559225-5559451)
chr2 (27-59)||(7943525-7943557)
chr2 (27-59)||(12486078-12486110)
chr2 (27-56)||(20218628-20218657)
chr2 (27-59)||(9152465-9152497)
chr2 (27-59)||(25795324-25795356)
chr2 (27-59)||(41153197-41153229)
chr2 (27-59)||(42698150-42698182)
[»] chr3 (4 HSPs)
chr3 (1-56)||(36344492-36344547)
chr3 (27-56)||(32711288-32711317)
chr3 (27-59)||(19649609-19649641)
chr3 (27-59)||(48643690-48643722)
[»] scaffold0002 (1 HSPs)
scaffold0002 (27-59)||(423334-423366)
[»] chr7 (7 HSPs)
chr7 (27-59)||(16861542-16861574)
chr7 (27-56)||(40362003-40362032)
chr7 (24-56)||(4826795-4826827)
chr7 (27-59)||(29559523-29559555)
chr7 (27-59)||(30869272-30869304)
chr7 (27-59)||(36245462-36245494)
chr7 (27-59)||(41088882-41088914)
[»] chr8 (7 HSPs)
chr8 (24-59)||(10839793-10839828)
chr8 (27-57)||(10184637-10184667)
chr8 (27-59)||(3236360-3236392)
chr8 (27-59)||(13831446-13831478)
chr8 (27-59)||(34711111-34711143)
chr8 (24-56)||(42786397-42786429)
chr8 (27-59)||(43932135-43932167)
[»] chr5 (3 HSPs)
chr5 (24-59)||(38394458-38394493)
chr5 (27-59)||(18473505-18473537)
chr5 (27-59)||(35349499-35349531)
[»] chr1 (8 HSPs)
chr1 (27-58)||(25021262-25021293)
chr1 (27-56)||(49944866-49944895)
chr1 (27-59)||(25021317-25021349)
chr1 (27-59)||(26070854-26070886)
chr1 (27-59)||(34332506-34332538)
chr1 (27-59)||(37096180-37096212)
chr1 (27-59)||(38040362-38040394)
chr1 (27-59)||(50155384-50155416)
[»] chr4 (6 HSPs)
chr4 (30-59)||(16412264-16412293)
chr4 (27-59)||(1140895-1140927)
chr4 (27-59)||(42169129-42169161)
chr4 (27-59)||(44111831-44111863)
chr4 (27-59)||(48361082-48361114)
chr4 (27-59)||(53225730-53225762)
[»] scaffold0027 (1 HSPs)
scaffold0027 (27-59)||(5500-5532)
[»] chr6 (3 HSPs)
chr6 (27-55)||(7649833-7649861)
chr6 (27-59)||(25538012-25538044)
chr6 (27-59)||(33119988-33120020)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5559451 - 5559225
Alignment:
Q  1 ttacttataatagtgatcggaggaagtacatcaattattcaatgaatctaaaaagtcaannnnnnnn-ataaataggaccaaagggagtaaaagttaaaa 99  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||         ||||||| ||||||| | ||||||||||||||    
T  5559451 ttacttataacagtgatcggagggagtacatcaattactcaatgaatctaaaaagtcaaatttttcttataaatatgaccaaatgaagtaaaagttaaaa 5559352  T
Q  100 tgtgaaattcaaggcacgaattctaacaaaannnnnnnacatttgactcattaacttgtaccttgagagtagaaattagcattgtctttaaattttaatc 199  Q
    |||||||||||| ||||||||| ||||||         ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  5559351 tgtgaaattcaaagcacgaattttaacaatttttctttacatttgactcattaacttgtaccttgagggtacaaattagcattgtctttaaattttaatc 5559252  T
Q  200 tgcatttccggtgcttaagcgcacact 226  Q
    ||||||||||||  ||||| |||||||    
T  5559251 tgcatttccggtagttaagtgcacact 5559225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 7943525 - 7943557
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  7943525 tacatcaattattcaatgaatctaaaaagtcaa 7943557  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 12486078 - 12486110
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  12486078 tacatcaattattcaatgaatctaaaaagtcaa 12486110  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 20218628 - 20218657
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagt 56  Q
    ||||||||||||||||||||||||||||||    
T  20218628 tacatcaattattcaatgaatctaaaaagt 20218657  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 9152465 - 9152497
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  9152465 tacatcaattactcaatgaatctaaaaagtcaa 9152497  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 25795324 - 25795356
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||| |||||||||||||||||||||||||||    
T  25795324 tacattaattattcaatgaatctaaaaagtcaa 25795356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 41153197 - 41153229
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  41153197 tacatcaattactcaatgaatctaaaaagtcaa 41153229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 42698150 - 42698182
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  42698150 tacatcaattactcaatgaatctaaaaagtcaa 42698182  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36344492 - 36344547
Alignment:
Q  1 ttacttataatagtgatcggaggaagtacatcaattattcaatgaatctaaaaagt 56  Q
    ||||||||||||||||||| |||  |||||| |||||||||||| |||||||||||    
T  36344492 ttacttataatagtgatcgaaggttgtacattaattattcaatgtatctaaaaagt 36344547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 32711288 - 32711317
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagt 56  Q
    ||||||||||||||||||||||||||||||    
T  32711288 tacatcaattattcaatgaatctaaaaagt 32711317  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 19649641 - 19649609
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||||||||||||||||| ||||||||||    
T  19649641 tacatcaattattcaatgaatcaaaaaagtcaa 19649609  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 48643690 - 48643722
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||| |||||||||||||||||||||||||||    
T  48643690 tacattaattattcaatgaatctaaaaagtcaa 48643722  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 423334 - 423366
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  423334 tacatcaattattcaatgaatctaaaaagtcaa 423366  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 16861574 - 16861542
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  16861574 tacatcaattattcaatgaatctaaaaagtcaa 16861542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 40362032 - 40362003
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagt 56  Q
    ||||||||||||||||||||||||||||||    
T  40362032 tacatcaattattcaatgaatctaaaaagt 40362003  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 4826827 - 4826795
Alignment:
Q  24 aagtacatcaattattcaatgaatctaaaaagt 56  Q
    |||||||||||||||| ||||||||||||||||    
T  4826827 aagtacatcaattattgaatgaatctaaaaagt 4826795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 29559523 - 29559555
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||| |||||||||||||||||||||||||||    
T  29559523 tacattaattattcaatgaatctaaaaagtcaa 29559555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 30869272 - 30869304
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  30869272 tacatcaattactcaatgaatctaaaaagtcaa 30869304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 36245462 - 36245494
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  36245462 tacatcaattactcaatgaatctaaaaagtcaa 36245494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 41088914 - 41088882
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||| |||||||||||||||||||||||||||    
T  41088914 tacattaattattcaatgaatctaaaaagtcaa 41088882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 10839828 - 10839793
Alignment:
Q  24 aagtacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||| |||||||||||||||||||||||||||    
T  10839828 aagtacattaattattcaatgaatctaaaaagtcaa 10839793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 10184637 - 10184667
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtc 57  Q
    |||||||||||||||||||||||||||||||    
T  10184637 tacatcaattattcaatgaatctaaaaagtc 10184667  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 3236392 - 3236360
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||||||||||||| |||||||||||    
T  3236392 tacatcaattattcaatgaatttaaaaagtcaa 3236360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 13831446 - 13831478
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||||| |||||||||||||||||||    
T  13831446 tacatcaattatttaatgaatctaaaaagtcaa 13831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 34711143 - 34711111
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  34711143 tacatcaattactcaatgaatctaaaaagtcaa 34711111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 42786429 - 42786397
Alignment:
Q  24 aagtacatcaattattcaatgaatctaaaaagt 56  Q
    |||||||||||||||| ||||||||||||||||    
T  42786429 aagtacatcaattattgaatgaatctaaaaagt 42786397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 43932135 - 43932167
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||| |||||||||||||||||||||||||||    
T  43932135 tacattaattattcaatgaatctaaaaagtcaa 43932167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 38394493 - 38394458
Alignment:
Q  24 aagtacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||| |||||||||||||||||||||||||||    
T  38394493 aagtacattaattattcaatgaatctaaaaagtcaa 38394458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 18473537 - 18473505
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  18473537 tacatcaattactcaatgaatctaaaaagtcaa 18473505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 35349499 - 35349531
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  35349499 tacatcaattactcaatgaatctaaaaagtcaa 35349531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 25021293 - 25021262
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtca 58  Q
    ||||||||||||||||||||||||||||||||    
T  25021293 tacatcaattattcaatgaatctaaaaagtca 25021262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 49944895 - 49944866
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagt 56  Q
    ||||||||||||||||||||||||||||||    
T  49944895 tacatcaattattcaatgaatctaaaaagt 49944866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 25021317 - 25021349
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||||||||| |||||||||||||||    
T  25021317 tacatcaattattcaataaatctaaaaagtcaa 25021349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 26070886 - 26070854
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  26070886 tacatcaattactcaatgaatctaaaaagtcaa 26070854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 34332538 - 34332506
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  34332538 tacatcaattactcaatgaatctaaaaagtcaa 34332506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 37096180 - 37096212
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||| |||||||||||||||||||||||||    
T  37096180 tacatcatttattcaatgaatctaaaaagtcaa 37096212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 38040362 - 38040394
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  38040362 tacatcaattaatcaatgaatctaaaaagtcaa 38040394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 50155384 - 50155416
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  50155384 tacatcaattactcaatgaatctaaaaagtcaa 50155416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 16412293 - 16412264
Alignment:
Q  30 atcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||||||||||||||||||||||    
T  16412293 atcaattattcaatgaatctaaaaagtcaa 16412264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 1140927 - 1140895
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||||||||||||||||||||||||| ||||    
T  1140927 tacatcaattattcaatgaatctaaaaattcaa 1140895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 42169129 - 42169161
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||||||||| |||||||||||||||    
T  42169129 tacatcaattattcaataaatctaaaaagtcaa 42169161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 44111831 - 44111863
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  44111831 tacatcaattactcaatgaatctaaaaagtcaa 44111863  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 48361114 - 48361082
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  48361114 tacatcaattactcaatgaatctaaaaagtcaa 48361082  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 53225730 - 53225762
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||| |||||||||||||||||||||||||||    
T  53225730 tacattaattattcaatgaatctaaaaagtcaa 53225762  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 5500 - 5532
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||| |||||||||||||||||||||||||||    
T  5500 tacattaattattcaatgaatctaaaaagtcaa 5532  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 7649861 - 7649833
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaag 55  Q
    |||||||||||||||||||||||||||||    
T  7649861 tacatcaattattcaatgaatctaaaaag 7649833  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 25538044 - 25538012
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    ||||||||||| |||||||||||||||||||||    
T  25538044 tacatcaattactcaatgaatctaaaaagtcaa 25538012  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 33119988 - 33120020
Alignment:
Q  27 tacatcaattattcaatgaatctaaaaagtcaa 59  Q
    |||||| ||||||||||||||||||||||||||    
T  33119988 tacatcgattattcaatgaatctaaaaagtcaa 33120020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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