View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_low_81 (Length: 243)
Name: NF9873_low_81
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_81 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 39620213 - 39620436
Alignment:
| Q |
20 |
acttatcacttatcattaaaggaagtaaaaacttactggtggtgggacaacagttcctgagaaaagattccataatacataggacggacgggtaaggaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39620213 |
acttatcacttatcattaaaggaagtaaaaacttactggtggtgggacaacagttcctgagaaaagattccataatacataggacggacgggtaaggaaa |
39620312 |
T |
|
| Q |
120 |
gagacaatggtttggtttggggttatagccattgtcatcatgccgtagtaggtacagtatagggaggtgaagaaaacaaaaaatatgtaccagaaaaatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39620313 |
gagacaatggtttggtttggggttatagctattgtcatcatgccgtagtaggtacagtatagggaggtgaagaaaacaaaaaatatgtaccagaaaaatt |
39620412 |
T |
|
| Q |
220 |
tagtcacgctccattcaaaaccaa |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39620413 |
tagtcacgctccattcaaaaccaa |
39620436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 39572995 - 39573105
Alignment:
| Q |
133 |
ggtttggggttatagccattgtcatcatgccgtagtaggtacagtatagggaggtgaagaaaacaaaaaatatgtaccagaaaaatttagtcacgctcca |
232 |
Q |
| |
|
|||||||||| | || |||||||||||||| |||| ||| |||| ||| ||||||| || | ||||| |||||||| | ||||||||| |||||||| |
|
|
| T |
39572995 |
ggtttggggtcaaggctattgtcatcatgccaaagtatgtatagtaaaggaaggtgaaaaacatgaaaaagatgtaccaaacaaatttagtgacgctcca |
39573094 |
T |
|
| Q |
233 |
ttcaaaaccaa |
243 |
Q |
| |
|
||| |||||| |
|
|
| T |
39573095 |
ctcataaccaa |
39573105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University