View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_84 (Length: 242)
Name: NF9873_low_84
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 28267512 - 28267610
Alignment:
| Q |
4 |
aaaagcagtttcatcactttccttatatagctacacactgatgcgttttcagtcgctttgtctgttataacaaccaacgcgttcctcacccgtcgtaag |
102 |
Q |
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| T |
28267512 |
aaaagcagtttcatcactttccttatatagctacacactgatgcgttttcagtcgctttgtctgttataacaaccaacgcgttcctcacccgtcgtaag |
28267610 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 28267674 - 28267730
Alignment:
| Q |
172 |
ggaaagttgatccgattttacttcattttcttttgtgtattgaacaataatattcat |
228 |
Q |
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| T |
28267674 |
ggaaagttgatccgattttccttcattttgttttgtgtattgaacaacaatattcat |
28267730 |
T |
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