View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_86 (Length: 240)

Name: NF9873_low_86
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_86
NF9873_low_86
[»] chr3 (19 HSPs)
chr3 (17-240)||(2175694-2175917)
chr3 (21-237)||(2152026-2152242)
chr3 (185-240)||(2196285-2196340)
chr3 (25-127)||(36646340-36646442)
chr3 (58-130)||(38971301-38971373)
chr3 (25-100)||(30923883-30923958)
chr3 (17-118)||(40880915-40881017)
chr3 (42-127)||(14548679-14548764)
chr3 (58-101)||(5391922-5391965)
chr3 (48-130)||(50004685-50004768)
chr3 (64-126)||(2304230-2304292)
chr3 (54-100)||(21754756-21754802)
chr3 (80-130)||(25182942-25182992)
chr3 (48-130)||(37273167-37273249)
chr3 (58-95)||(3044249-3044286)
chr3 (85-130)||(50211805-50211850)
chr3 (78-126)||(1810040-1810088)
chr3 (42-118)||(21574517-21574593)
chr3 (58-98)||(53762381-53762421)
[»] chr6 (19 HSPs)
chr6 (62-127)||(1669756-1669821)
chr6 (42-130)||(2460106-2460194)
chr6 (25-101)||(30523669-30523745)
chr6 (51-116)||(4080952-4081017)
chr6 (61-130)||(27693394-27693463)
chr6 (58-123)||(20368142-20368207)
chr6 (58-101)||(769181-769224)
chr6 (58-101)||(1575938-1575981)
chr6 (52-123)||(22743518-22743589)
chr6 (58-101)||(31624133-31624176)
chr6 (38-129)||(34544100-34544191)
chr6 (28-130)||(33080533-33080635)
chr6 (77-130)||(3158661-3158714)
chr6 (42-95)||(9667975-9668028)
chr6 (61-130)||(27595522-27595591)
chr6 (78-127)||(33116647-33116696)
chr6 (64-101)||(33832257-33832294)
chr6 (53-101)||(7931710-7931758)
chr6 (78-130)||(19752761-19752813)
[»] chr7 (13 HSPs)
chr7 (70-130)||(8094361-8094421)
chr7 (42-118)||(22387863-22387939)
chr7 (42-130)||(28165118-28165206)
chr7 (25-101)||(44615088-44615164)
chr7 (58-101)||(15740395-15740438)
chr7 (62-101)||(30535610-30535649)
chr7 (42-95)||(12234879-12234932)
chr7 (77-130)||(25670541-25670594)
chr7 (45-130)||(33894657-33894742)
chr7 (53-130)||(36598311-36598388)
chr7 (58-102)||(30317005-30317049)
chr7 (78-118)||(31003003-31003043)
chr7 (62-130)||(36887316-36887384)
[»] chr4 (15 HSPs)
chr4 (42-130)||(27123307-27123395)
chr4 (58-130)||(2996616-2996688)
chr4 (62-104)||(27970105-27970147)
chr4 (44-101)||(18967415-18967471)
chr4 (53-101)||(1965979-1966027)
chr4 (62-130)||(4071925-4071993)
chr4 (78-130)||(6428081-6428133)
chr4 (25-101)||(20936213-20936289)
chr4 (25-87)||(30207569-30207631)
chr4 (64-125)||(10173570-10173631)
chr4 (81-130)||(50746041-50746090)
chr4 (25-101)||(1137722-1137798)
chr4 (60-124)||(7368015-7368079)
chr4 (25-89)||(35743292-35743356)
chr4 (84-124)||(37498016-37498056)
[»] chr2 (20 HSPs)
chr2 (184-240)||(35538549-35538605)
chr2 (178-240)||(35556982-35557044)
chr2 (77-125)||(43808620-43808668)
chr2 (17-101)||(28933825-28933909)
chr2 (25-102)||(41817178-41817255)
chr2 (43-118)||(1741999-1742074)
chr2 (49-124)||(14316106-14316181)
chr2 (80-123)||(27699491-27699534)
chr2 (42-125)||(37034049-37034132)
chr2 (43-126)||(43985237-43985320)
chr2 (25-131)||(32821819-32821925)
chr2 (25-95)||(34652026-34652096)
chr2 (25-94)||(1939323-1939392)
chr2 (48-101)||(10285893-10285946)
chr2 (93-130)||(43965077-43965114)
chr2 (78-130)||(1318299-1318351)
chr2 (49-101)||(5902533-5902585)
chr2 (62-130)||(9478346-9478414)
chr2 (61-101)||(32106783-32106823)
chr2 (25-101)||(33941919-33941995)
[»] chr1 (20 HSPs)
chr1 (25-101)||(4699599-4699675)
chr1 (42-101)||(35925717-35925776)
chr1 (58-127)||(4868443-4868511)
chr1 (78-130)||(42336678-42336730)
chr1 (40-95)||(6976950-6977004)
chr1 (25-88)||(30257693-30257756)
chr1 (43-110)||(38266435-38266502)
chr1 (26-124)||(10439697-10439795)
chr1 (62-112)||(29635394-29635444)
chr1 (71-112)||(7356511-7356552)
chr1 (42-130)||(601068-601155)
chr1 (58-130)||(4445751-4445823)
chr1 (53-101)||(6262058-6262106)
chr1 (25-101)||(24460391-24460467)
chr1 (62-130)||(31517695-31517763)
chr1 (42-130)||(32515396-32515484)
chr1 (78-126)||(34536221-34536269)
chr1 (53-101)||(37811890-37811938)
chr1 (54-126)||(38170649-38170721)
chr1 (79-111)||(45234257-45234289)
[»] chr8 (17 HSPs)
chr8 (42-129)||(27645931-27646018)
chr8 (62-107)||(36626435-36626480)
chr8 (42-118)||(7918413-7918489)
chr8 (25-101)||(11183555-11183631)
chr8 (25-101)||(14949876-14949952)
chr8 (54-101)||(3090185-3090232)
chr8 (48-119)||(37461175-37461246)
chr8 (54-101)||(39049311-39049358)
chr8 (43-97)||(3254253-3254307)
chr8 (77-130)||(30191096-30191149)
chr8 (62-123)||(37822621-37822682)
chr8 (58-130)||(778432-778504)
chr8 (62-126)||(9700048-9700112)
chr8 (90-126)||(10923671-10923707)
chr8 (78-130)||(13000379-13000431)
chr8 (45-101)||(40357922-40357978)
chr8 (58-101)||(40902187-40902231)
[»] chr5 (21 HSPs)
chr5 (42-123)||(37526161-37526242)
chr5 (42-123)||(37690598-37690679)
chr5 (62-118)||(8089983-8090039)
chr5 (62-130)||(11700333-11700401)
chr5 (25-125)||(37611175-37611275)
chr5 (25-125)||(37787905-37788005)
chr5 (44-130)||(342345-342431)
chr5 (48-130)||(4619740-4619822)
chr5 (24-86)||(19369322-19369384)
chr5 (42-95)||(10272421-10272474)
chr5 (64-101)||(37489066-37489103)
chr5 (42-123)||(37588322-37588403)
chr5 (64-101)||(37794682-37794719)
chr5 (25-86)||(40864428-40864489)
chr5 (65-130)||(41016228-41016293)
chr5 (43-88)||(42375302-42375347)
chr5 (78-130)||(10152397-10152449)
chr5 (62-94)||(12467180-12467212)
chr5 (25-101)||(17368686-17368762)
chr5 (78-130)||(25079523-25079574)
chr5 (78-130)||(25137492-25137543)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 2175917 - 2175694
Alignment:
Q  17 ataaattgtttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2175917 ataaattgtttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagt 2175818  T
Q  117 cttacaagtgcttacacaataatactaatagataagctcaaataagtcaaactaattaattacctgcagggaatgcatgaactttacttgctttggagat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2175817 cttacaagtgcttacacaataatactaatagataagctcaaataagtcaaactaattaattacctgcagggaatgcatgaactttacttgctttggagat 2175718  T
Q  217 tttatagtaaagttcacctaatgt 240  Q
    ||||||||||||||||||||||||    
T  2175717 tttatagtaaagttcacctaatgt 2175694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 2152242 - 2152026
Alignment:
Q  21 attgtttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtctta 120  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |    
T  2152242 attgtttcataaactatccttgagagcttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttttcataaaatatctcaattagtctca 2152143  T
Q  121 caagtgcttacacaataatactaatagataagctcaaataagtcaaactaattaattacctgcagggaatgcatgaactttacttgctttggagatttta 220  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2152142 caagtgcttatacaattatactaatagttaagctcaaataagtcaaactaattaagtacctgcagggaatgcatgaactttacttgctttggagatttta 2152043  T
Q  221 tagtaaagttcacctaa 237  Q
    ||||| |||||||||||    
T  2152042 tagtatagttcacctaa 2152026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 2196340 - 2196285
Alignment:
Q  185 gggaatgcatgaactttacttgctttggagattttatagtaaagttcacctaatgt 240  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2196340 gggaatccatgaactttacttgctttggagattttatagtaaagttcacctaatgt 2196285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 36646442 - 36646340
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    |||||||| ||| ||| ||||||||||||||| ||| |||||||||||||   ||||| ||||||| |||| ||||| || || ||||||||||||||||    
T  36646442 tttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatagtcttacaag 36646343  T
Q  125 tgc 127  Q
    |||    
T  36646342 tgc 36646340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 38971301 - 38971373
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||||||| ||||||| ||||  |||||||| ||||||||||| | ||||| |||||||||||    
T  38971301 aagttgaaaacagcttacgaacatgttataaactgttttcaaaaactatctcagacagtctcacaagtgctta 38971373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 30923958 - 30923883
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcata 100  Q
    |||||||| ||| ||| ||||||||||||||| ||| ||||||||||||| | |||||||||||| ||||| ||||    
T  30923958 tttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 40881017 - 40880915
Alignment:
Q  17 ataaattgttt-cataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatag 115  Q
    ||||||||||| ||||||||| ||| ||||  ||||| ||| ||||| |||||| |||||   ||||||||||||||||||||||| || ||||||| ||    
T  40881017 ataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctcaaacag 40880918  T
Q  116 tct 118  Q
    |||    
T  40880917 tct 40880915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 14548764 - 14548679
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgc 127  Q
    ||||| |||| |||| ||| |||||||||| ||  || |||||||| ||||||||||||| || ||||||| ||||| ||||||||    
T  14548764 gagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctctctcaaacagtctcacaagtgc 14548679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 5391922 - 5391965
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||||||||  ||||||||||||| |||||||||||    
T  5391922 aagttgaaaacagcttatgaacatgtcataagctgttttcataa 5391965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 50004685 - 50004768
Alignment:
Q  48 ttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa-actatctcaaatagtcttacaagtgctta 130  Q
    |||| |||| ||| |||||||||||||  ||||||||||||||||||| |||||  |  ||||||| |||||||||| ||||||    
T  50004685 ttattgaaataagctgaaaacagcttaagaacatgtcataagttgtttccataaggccctctcaaacagtcttacaattgctta 50004768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 2304292 - 2304230
Alignment:
Q  64 aaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtg 126  Q
    |||||||||||  |||||||||||||||| ||||||||  | ||||||||||| | |||||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtg 2304230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 21754756 - 21754802
Alignment:
Q  54 aaacaagttgaaaacagcttacaaacatgtcataagttgttttcata 100  Q
    |||||||||||||||| || |  ||||||||||||||||||||||||    
T  21754756 aaacaagttgaaaacaactgatgaacatgtcataagttgttttcata 21754802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 25182992 - 25182942
Alignment:
Q  80 atgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||||||||||| || ||||||| ||||| |||||| ||||    
T  25182992 atgtcataagttgttttcataagctctctcaaacagtctcacaagttctta 25182942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 37273167 - 37273249
Alignment:
Q  48 ttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||| |||| |||||||||||| ||||   |||||||||||||||||| ||||| || || |||| ||||| || ||||||||    
T  37273167 ttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgctta 37273249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 3044286 - 3044249
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttt 95  Q
    |||||||||||||||||  |||||||||||||||||||    
T  3044286 aagttgaaaacagcttatgaacatgtcataagttgttt 3044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 50211805 - 50211850
Alignment:
Q  85 ataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||||||  | ||||||| |||||||||||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagtgctta 50211850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 1810040 - 1810088
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtg 126  Q
    |||||||||||||||||| | ||| || ||||||||||||| |||||||    
T  1810040 acatgtcataagttgtttccgtaagctctctcaaatagtctcacaagtg 1810088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 21574517 - 21574593
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtct 118  Q
    ||||| |||| |||| ||| | ||| |||||||  ||||||||||||||||||||||||| || || |||| |||||    
T  21574517 gagagcttatggaaataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 53762421 - 53762381
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttca 98  Q
    |||||||||||||||||  ||||||||||||| ||||||||    
T  53762421 aagttgaaaacagcttatgaacatgtcataagctgttttca 53762381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 1669821 - 1669756
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgc 127  Q
    ||||||||||||| | |||||||||||||||||||||||| || || ||| |||||||||||||||    
T  1669821 tgaaaacagcttatagacatgtcataagttgttttcataagctctcccaattagtcttacaagtgc 1669756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 2460194 - 2460106
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||| |||| |||| |||||||||||| |||| | |||||||||||||||||| ||||| || ||||||| ||||| |||||| ||||    
T  2460194 gagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtactta 2460106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 30523669 - 30523745
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||| ||| ||||||||| |||||||||  ||||||||||||||||  |||||| |||||||||||| |||||    
T  30523669 tttcataagctatccttgagaggttatagaaattagttgaaaacagcttatgaacatggcataagttgtttccataa 30523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 4080952 - 4081017
Alignment:
Q  51 tagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagt 116  Q
    |||||| |||||||||||| ||||  |||||| ||||||||||||||||||| | |||||||||||    
T  4080952 tagaaataagttgaaaacaacttatgaacatggcataagttgttttcataaaatctctcaaatagt 4081017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 27693463 - 27693394
Alignment:
Q  61 ttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||| ||||||  ||||||||||||||||||| |||||| | ||||||||||||| |||||| ||||    
T  27693463 ttgaaaatagcttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtactta 27693394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 20368207 - 20368142
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaa 123  Q
    |||||||||  ||||||  |||||||||||||||||||||||||  | || |||||||||||||||    
T  20368207 aagttgaaactagcttatgaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 769181 - 769224
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||||||||  ||||||||||||| |||||||||||    
T  769181 aagttgaaaacagcttatgaacatgtcataagatgttttcataa 769224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 1575938 - 1575981
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||| |||||||||||  |||||||||||||||||||||||||    
T  1575938 aagttaaaaacagcttatgaacatgtcataagttgttttcataa 1575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 22743518 - 22743589
Alignment:
Q  52 agaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaa 123  Q
    ||||| ||| |||||||||||||  ||||||| ||||||||||||||| | || || || ||||||||||||    
T  22743518 agaaataagctgaaaacagcttatgaacatgtaataagttgttttcatgagctctcacagatagtcttacaa 22743589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 31624133 - 31624176
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||||||||  ||||||||||||| |||||||||||    
T  31624133 aagttgaaaacagcttatgaacatgtcataagctgttttcataa 31624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 34544191 - 34544100
Alignment:
Q  38 ccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctt 129  Q
    ||||||||||||||||||| ||| |||||| || |||   |||||||||||  |||||||||||  | | ||||||||| | ||||||||||    
T  34544191 ccttgagagtttatagaaataagatgaaaatagtttatggacatgtcataaactgttttcataagatctttcaaatagtttcacaagtgctt 34544100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 33080635 - 33080533
Alignment:
Q  28 cataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgc 127  Q
    ||||||||| ||| ||||| ||||||||| ||  |||||| | |||| ||||||||||||||||| ||||| ||| | | | ||| | ||| ||||||||    
T  33080635 cataaactatcctggagagcttatagaaataaactgaaaataacttataaacatgtcataagttggtttcagaaattctattaaacaatctcacaagtgc 33080536  T
Q  128 tta 130  Q
    |||    
T  33080535 tta 33080533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 3158714 - 3158661
Alignment:
Q  77 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||||||||| | ||| |||||||| |||||| |||||| |||||||||||    
T  3158714 aacatgtcataagctatttccataaactttctcaattagtctcacaagtgctta 3158661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 9668028 - 9667975
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttt 95  Q
    ||||| |||| |||| |||||||||||||||||   ||||||||||||||||||    
T  9668028 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 9667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 27595591 - 27595522
Alignment:
Q  61 ttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||| ||||||  ||||||||||||||||||| |||||| | || |||| ||||| | |||||||||    
T  27595591 ttgaaaatagcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgctta 27595522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 33116647 - 33116696
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgc 127  Q
    ||||||||||||||||||||||||| |  |||||| ||||| ||||||||    
T  33116647 acatgtcataagttgttttcataaattccctcaaacagtctcacaagtgc 33116696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 33832294 - 33832257
Alignment:
Q  64 aaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  33832294 aaaacaacttataaacatgtcataagttgttttcataa 33832257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 7931758 - 7931710
Alignment:
Q  53 gaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||| ||| |||||||| ||||  |||||||||||||||||||||||||    
T  7931758 gaaataagctgaaaacaacttaagaacatgtcataagttgttttcataa 7931710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 19752813 - 19752761
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||| ||||| |||||||| |||| || ||||||||||||| |||||||||||    
T  19752813 acatatcatacgttgtttttataagctctctcaaatagtctcacaagtgctta 19752761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 8094361 - 8094421
Alignment:
Q  70 gcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||| |||||||||||||| |||||||||||| | ||||||||||||| |||||||||||    
T  8094361 gcttataaacatgtcataagctgttttcataaaatctctcaaatagtctcacaagtgctta 8094421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 22387939 - 22387863
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtct 118  Q
    ||||| |||| |||| ||||| ||||||| ||| ||||||| |||||||||||||||||| || || |||| |||||    
T  22387939 gagagcttatggaaataagttaaaaacagtttataaacatgccataagttgttttcataagctctcccaaacagtct 22387863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 28165118 - 28165206
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||| |||| |||| |||||||||||||||||  |||| ||| | || ||||| ||||| |||||||||| ||||| | |||||||||    
T  28165118 gagagcttatggaaataagttgaaaacagcttatgaacaggtcttgagctgtttccataagctatctcaaagagtctcataagtgctta 28165206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 44615164 - 44615088
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||||||  || |||||||||||||| |||| ||  ||||||||||||    ||||||||||||||||||||||||    
T  44615164 tttcataagttagccttgagagtttatggaaataacgtgaaaacagcttgtggacatgtcataagttgttttcataa 44615088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 15740438 - 15740395
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||| |||||||||||  |||||||||||||||||||||||||    
T  15740438 aagttaaaaacagcttatgaacatgtcataagttgttttcataa 15740395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 30535610 - 30535649
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  30535610 tgaaaacagcttacgaacatatcataagttgttttcataa 30535649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 12234932 - 12234879
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttt 95  Q
    ||||| |||| |||| ||| ||||||||||||| | ||||||||||||||||||    
T  12234932 gagagcttatggaaataagctgaaaacagcttatagacatgtcataagttgttt 12234879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 25670594 - 25670541
Alignment:
Q  77 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||||||||||||||  | ||||||| ||||| ||||| |||||    
T  25670594 aacatgtcataagttgttttcataagttttctcaaacagtctcacaagagctta 25670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 33894657 - 33894742
Alignment:
Q  45 agtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||| |||| ||| |||||||| ||||   |||||||||| | ||||||||||| || || |||| ||||| |||||||||||    
T  33894657 agtttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgctta 33894742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 36598388 - 36598311
Alignment:
Q  53 gaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||| ||| |||||||||||||  ||||||||||||| ||||| ||||| || ||||||| | ||| |||| ||||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgctta 36598311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 30317005 - 30317049
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataaa 102  Q
    |||||||||||||||||  ||||| | ||||||||||||||||||    
T  30317005 aagttgaaaacagcttattaacattttataagttgttttcataaa 30317049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 31003003 - 31003043
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtct 118  Q
    ||||||||||||||||||| ||||||| ||||||| |||||    
T  31003003 acatgtcataagttgtttttataaactttctcaaacagtct 31003043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 36887384 - 36887316
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||  |||||||||| || || |||||||| || ||||||| ||| ||| |||||||||    
T  36887384 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgctta 36887316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 27123395 - 27123307
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||| |||| |||| |||||||||||| |||| | |||||||||||||||||| ||||| || ||||||| ||||| |||||| ||||    
T  27123395 gagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtactta 27123307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 2996616 - 2996688
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||| ||||||   |||||||||||||||||||||||| || ||||||| ||||| | |||||||||    
T  2996616 aagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgctta 2996688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 27970105 - 27970147
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaact 104  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  27970105 tgaaaacagcttatagacatgtcataagttgttttcataaact 27970147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 18967471 - 18967415
Alignment:
Q  44 gagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||||||||||| ||||||||||||| || |||||||||||| |||||||| |||||    
T  18967471 gagtttatagaaataagttgaaaacagattgcaaacatgtcat-agttgtttccataa 18967415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 1965979 - 1966027
Alignment:
Q  53 gaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||||||    
T  1965979 gaaataagttaaaaacagcttatgaacatgtcataagttgttttcataa 1966027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 4071925 - 4071993
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||| ||||| ||||  ||||||| ||||||||||| || ||||||| ||||| |||||||||||    
T  4071925 tgaaaacaacttaccaacaaatcataagctgttttcataagctctctcaaacagtctcacaagtgctta 4071993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 6428081 - 6428133
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||||||||||||| || |||||||  |||| |||||||||||    
T  6428081 acatgtcataagttgttttcataatctctctcaaactgtctcacaagtgctta 6428133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 20936289 - 20936213
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||  ||| ||| ||||| |||| |||| ||| |||||||||||||  ||||| |||||||||||||||||||    
T  20936289 tttcatattctatcctggagagattatggaaataaggtgaaaacagcttatgaacatatcataagttgttttcataa 20936213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 30207631 - 30207569
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcata 87  Q
    |||||||| ||||| | ||||| |||| |||| ||| ||||||||||||||| ||||||||||    
T  30207631 tttcataagctaccttagagagattatggaaataagctgaaaacagcttacagacatgtcata 30207569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 10173570 - 10173631
Alignment:
Q  64 aaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 125  Q
    |||||||||||| |||||||||| ||||||||||| || | || ||||| ||||| ||||||    
T  10173570 aaaacagcttacgaacatgtcatgagttgttttcacaagcaatatcaaacagtctcacaagt 10173631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 50746041 - 50746090
Alignment:
Q  81 tgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||| |||||||||||||||  | |||||||||| |||||||||||    
T  50746041 tgtcataaattgttttcataaactcacacaaatagtctcacaagtgctta 50746090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 1137722 - 1137798
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||| ||  ||||| |||| |||| ||  |||||||| ||||  ||||||||||||| |||||||||||    
T  1137722 tttcataaactatccaagagagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataa 1137798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 7368079 - 7368015
Alignment:
Q  60 gttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    ||||||| ||||||| |||||||||||||| ||||||||| | || || |||| ||||| |||||    
T  7368079 gttgaaagcagcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaag 7368015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 35743292 - 35743356
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataag 89  Q
    |||||||||||| | |  ||||||||| |||| |||||| ||||| |||| ||||||||||||||    
T  35743292 tttcataaactatcatgaagagtttatggaaataagttggaaacaacttataaacatgtcataag 35743356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 37498016 - 37498056
Alignment:
Q  84 cataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  37498016 cataagttgttttcataaactctttcaaagagtcttacaag 37498056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 35538605 - 35538549
Alignment:
Q  184 agggaatgcatgaactttacttgctttggagattttatagtaaagttcacctaatgt 240  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  35538605 agggaatccatgaactttatttgtttcggagattttatagtaaagttcacctaatgt 35538549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 35557044 - 35556982
Alignment:
Q  178 acctgcagggaatgcatgaactttacttgctttggagattttatagtaaagttcacctaatgt 240  Q
    ||||| ||||||| ||||||||||| ||| || ||||||||||||||||||||||| ||||||    
T  35557044 acctgaagggaatccatgaactttatttgtttcggagattttatagtaaagttcacttaatgt 35556982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 43808620 - 43808668
Alignment:
Q  77 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 125  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  43808620 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 43808668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 28933825 - 28933909
Alignment:
Q  17 ataaattgttt-cataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||||||||| ||||| ||| ||| ||||| | ||||||| |||||||||||||| ||  |||||| ||||||||||||||||||    
T  28933825 ataaattgttttcataagctatcctagagagctgatagaaataagttgaaaacagc-tatgaacatgccataagttgttttcataa 28933909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 41817178 - 41817255
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaa 102  Q
    |||||||||||| ||| ||||| |||| |||| ||| ||||||||  |||  ||||||||||||| ||||||||||||    
T  41817178 tttcataaactatcctggagagcttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataaa 41817255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 1742074 - 1741999
Alignment:
Q  43 agagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtct 118  Q
    ||||||||| |||| |||||||| | ||||||   |||||||||||||||||| ||||| || || ||||||||||    
T  1742074 agagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctctcccaaatagtct 1741999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 14316181 - 14316106
Alignment:
Q  49 tatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    |||||||| ||| ||||||||||||| | | |||||||||||||||| ||||| || ||  ||||||||| |||||    
T  14316181 tatagaaataagctgaaaacagcttatacatatgtcataagttgtttccataagctctccaaaatagtctcacaag 14316106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 27699534 - 27699491
Alignment:
Q  80 atgtcataagttgttttcataaactatctcaaatagtcttacaa 123  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  27699534 atgtcataagttgttttcataaactctctcaaacagtctcacaa 27699491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 37034049 - 37034132
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 125  Q
    ||||| ||||||||| ||||||||||||  ||| ||||||||| |||| ||||| ||||| || |  |||||||||| ||||||    
T  37034049 gagagcttatagaaataagttgaaaacaatttataaacatgtcttaagctgtttccataatctctaacaaatagtctcacaagt 37034132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 43985237 - 43985320
Alignment:
Q  43 agagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtg 126  Q
    |||| |||| ||||||||||||||| ||||||   ||||||||||||||||||   ||| || ||||||| ||| |||||||||    
T  43985237 agagcttatggaaacaagttgaaaaaagcttatggacatgtcataagttgtttcagtaatctctctcaaacagttttacaagtg 43985320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 32821819 - 32821925
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    |||||||| ||| |||  |||| ||||||||| ||  |||||||||||||   ||||||||||||||||||  ||||||| |  |||| |||||| |||     
T  32821819 tttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaacagtcttgcaaa 32821918  T
Q  125 tgcttac 131  Q
    |||||||    
T  32821919 tgcttac 32821925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 34652096 - 34652026
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttt 95  Q
    |||||||| ||| | | ||||| |||| |||| |||||||||||||||||   ||||||||||||||||||    
T  34652096 tttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 34652026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 1939392 - 1939323
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgtt 94  Q
    |||||||| |||  || ||||| |||| |||| |||||||||||||||||   |||||||||||||||||    
T  1939392 tttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 10285893 - 10285946
Alignment:
Q  48 ttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||| |||| |||||||||||||||||   |||||||||||||| |||||||||    
T  10285893 ttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataa 10285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 43965114 - 43965077
Alignment:
Q  93 ttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  43965114 ttttcataaactatatcaaatagtctgacaagtgctta 43965077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 1318299 - 1318351
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||| ||||||||||| || || |||| ||||| |||||||||||    
T  1318299 acatgtcataagatgttttcataagctctcacaaacagtctcacaagtgctta 1318351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 5902585 - 5902533
Alignment:
Q  49 tatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||| ||||||| ||||||||| |||  ||||||||||||| |||||||||||    
T  5902585 tataaaaacaagctgaaaacagtttatgaacatgtcataagctgttttcataa 5902533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 9478346 - 9478414
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||   |||||| ||||||||||| |||||||| ||||||| ||||  |||||| ||||    
T  9478346 tgaaaacagcttatggacatgtaataagttgtttgcataaactctctcaaacagtcacacaagtactta 9478414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 32106823 - 32106783
Alignment:
Q  61 ttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||||||| | |||||||||| |||||||||||    
T  32106823 ttgaaaacagcttacagatatgtcataagctgttttcataa 32106783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 33941919 - 33941995
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||| ||| | | ||||||||||   || ||||||||| |||||||  ||| |||||||||||||||||||||    
T  33941919 tttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataa 33941995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 4699675 - 4699599
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||| ||  ||||| ||||||||| ||| | |||||||||||  |||||||||||||||||||||||||    
T  4699675 tttcataaactatcccggagagcttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataa 4699599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 35925717 - 35925776
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||| |||| |||||||||||||||||  ||||||||||||| |||||||||||    
T  35925717 gagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 4868443 - 4868511
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgc 127  Q
    |||||||||||| ||||   ||||||||||||||| ||||||||||| ||||||| ||||| ||||||||    
T  4868443 aagttgaaaacaacttattgacatgtcataagttg-tttcataaactctctcaaacagtctcacaagtgc 4868511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 42336678 - 42336730
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||||||||||||||||||||  ||||||||| ||||  |||||||||||    
T  42336678 acatgtcataagttgttttcataagttatctcaaacagtcgcacaagtgctta 42336730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 6976950 - 6977004
Alignment:
Q  40 ttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttt 95  Q
    |||||||||||| |||| ||||| |||||||||||  |||||||||||||||||||    
T  6976950 ttgagagtttatggaaataagtt-aaaacagcttatgaacatgtcataagttgttt 6977004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 30257693 - 30257756
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataa 88  Q
    |||||||||||| ||| ||| | ||||||||| ||| |||||||||||||  ||||||||||||    
T  30257693 tttcataaactatcctggagggcttatagaaataagctgaaaacagcttatgaacatgtcataa 30257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 38266502 - 38266435
Alignment:
Q  43 agagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctca 110  Q
    |||| ||||||||| ||||||||||||  |||  |||||||| |||||| |||||||||||| |||||    
T  38266502 agagcttatagaaataagttgaaaacaaattatgaacatgtcgtaagttattttcataaactctctca 38266435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 10439697 - 10439795
Alignment:
Q  26 ttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    |||| |||||| ||| |||||||||| |||| ||| ||||| ||| |||   ||||||||||  |||||||||||| || || |||||||||| |||||    
T  10439697 ttcaaaaactatcctggagagtttatggaaataagctgaaagcagattatggacatgtcatagtttgttttcataagctctcccaaatagtctcacaag 10439795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 29635394 - 29635444
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaa 112  Q
    |||||||| |||| ||||||||||||| ||||||||||||| | |||||||    
T  29635394 tgaaaacaacttataaacatgtcataacttgttttcataaattctctcaaa 29635444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 7356552 - 7356511
Alignment:
Q  71 cttacaaacatgtcataagttgttttcataaactatctcaaa 112  Q
    |||| ||||||||||||||||||||| ||||||| |||||||    
T  7356552 cttataaacatgtcataagttgtttttataaactctctcaaa 7356511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 601068 - 601155
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||||||  ||| ||| |||||| ||||||||| ||||||||||||||||||| || | | || |||| ||||| | |||||||||    
T  601068 gagagtttatgaaaataagctgaaaatagcttacaa-catgtcataagttgttttcttagattctcccaaacagtctcaaaagtgctta 601155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 4445751 - 4445823
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||||||||||||   ||||||| ||||| || ||||||||| | || |||| ||||| |||||||||||    
T  4445751 aagttgaaaacagcttctgaacatgttataagctgctttcataaattctcccaaacagtctcacaagtgctta 4445823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 6262058 - 6262106
Alignment:
Q  53 gaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||| |||||||||| ||||||  |||||||||||||||||| ||||||    
T  6262058 gaaataagttgaaaatagcttatgaacatgtcataagttgttctcataa 6262106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 24460467 - 24460391
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||| ||| ||||||||| ||| | ||| ||| || ||||||||||  ||||||||||||| | |||||||||    
T  24460467 tttcataagctatccttgagagcttacaaaaataagctggaaacagcttatgaacatgtcataagctattttcataa 24460391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 31517763 - 31517695
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||  |||||||||| ||||||||| ||||  | || |||| ||||| |||||||||||    
T  31517763 tgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgctta 31517695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 32515484 - 32515396
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||| ||||||| | |||||||||||| ||||   |||||||||| | ||||| ||||| || || |||| ||||| |||||||||||    
T  32515484 gagagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgctta 32515396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 34536221 - 34536269
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtg 126  Q
    |||||||||||| ||||||||||| | |||||||| ||||| |||||||    
T  34536221 acatgtcataagctgttttcataagccatctcaaacagtctcacaagtg 34536269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 37811890 - 37811938
Alignment:
Q  53 gaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||| ||||||||||||| |||  ||||||||||||| |||||||||||    
T  37811890 gaaataagttgaaaacagtttatgaacatgtcataagctgttttcataa 37811938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 38170721 - 38170649
Alignment:
Q  54 aaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtg 126  Q
    ||||||| |||||||| ||||  ||||||||||||| ||||||||||| || || |||  ||||| |||||||    
T  38170721 aaacaagctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaagtg 38170649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 45234257 - 45234289
Alignment:
Q  79 catgtcataagttgttttcataaactatctcaa 111  Q
    |||||||||||||||||||||||||| ||||||    
T  45234257 catgtcataagttgttttcataaactctctcaa 45234289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 27645931 - 27646018
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctt 129  Q
    ||||| ||||||||| |||||||||| |||||| | | |||||||||||||| | ||||| || |||||||  ||||||||| |||||    
T  27645931 gagagcttatagaaataagttgaaaatagcttatagatatgtcataagttgtatgcataagctctctcaaacggtcttacaaatgctt 27646018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 36626480 - 36626435
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatc 107  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  36626480 tgaaaacagcttataaatatgtcataagttgtttttataaactatc 36626435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 7918489 - 7918413
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtct 118  Q
    ||||| |||| |||| |||||| ||||||||||  |||||||| |||||||||||||||| || || |||| |||||    
T  7918489 gagagcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagtct 7918413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 11183555 - 11183631
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||| || ||||||| ||||| |||| |||| ||| ||||||||||||| | |||| |||||||||||||| ||||    
T  11183555 tttcacaagctaccctggagagcttatggaaataagctgaaaacagcttatagacatatcataagttgtttttataa 11183631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 14949876 - 14949952
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||| ||| |||  |||| ||||||||| ||| |||||||||||||   |||||||||||||| |||||||||    
T  14949876 tttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataa 14949952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 3090185 - 3090232
Alignment:
Q  54 aaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||||| ||||||||||||||  ||||| ||||||||||||||||||    
T  3090185 aaacaagctgaaaacagcttactgacatgccataagttgttttcataa 3090232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 37461175 - 37461246
Alignment:
Q  48 ttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtctt 119  Q
    ||||| ||| ||||||||| | || ||||||||||||||||||| ||| |||||||| ||||| | ||||||    
T  37461175 ttataaaaataagttgaaatcggcctacaaacatgtcataagttatttccataaactctctcatacagtctt 37461246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 39049311 - 39049358
Alignment:
Q  54 aaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||||||||||||   |||||| |||||||||||||||||    
T  39049311 aaacaagttgaaaacagcttattgacatgttataagttgttttcataa 39049358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 3254253 - 3254307
Alignment:
Q  43 agagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttc 97  Q
    ||||| |||||||| ||| |||||||||||||  ||||||||||||| |||||||    
T  3254253 agagtgtatagaaataagctgaaaacagcttatgaacatgtcataagctgttttc 3254307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 30191149 - 30191096
Alignment:
Q  77 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||||||||||||||| ||||| || || |||| ||||| |||||||||||    
T  30191149 aacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgctta 30191096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 37822682 - 37822621
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaa 123  Q
    |||||||| ||||||||||| |||||| ||||||| ||||| | ||||||| ||||| ||||    
T  37822682 tgaaaacaacttacaaacatatcataaattgttttaataaattttctcaaacagtctcacaa 37822621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 778432 - 778504
Alignment:
Q  58 aagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||| ||||||||| |||| || |||||||||||||  | |  |||| ||||| |||||||||||    
T  778432 aagttgaaaacaacttacaaacgtgtcttatgttgttttcataagttcttgcaaacagtctcacaagtgctta 778504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 9700048 - 9700112
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtg 126  Q
    |||||||||||||   ||||||||||| ||| ||||| || || ||||||||||||| |||||||    
T  9700048 tgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtg 9700112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 10923671 - 10923707
Alignment:
Q  90 ttgttttcataaactatctcaaatagtcttacaagtg 126  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  10923671 ttgttttcataaactctctcaaattgtcttacaagtg 10923707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 13000431 - 13000379
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||||||  |||||||| |  |||||||||| |||||||||||    
T  13000431 acatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgctta 13000379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 40357922 - 40357978
Alignment:
Q  45 agtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    ||||| |||||||||| | ||||||  ||| | ||||||||||||||||||||||||    
T  40357922 agtttttagaaacaagctaaaaacatgttatagacatgtcataagttgttttcataa 40357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 40902231 - 40902187
Alignment:
Q  58 aagttgaaaacagcttacaaac-atgtcataagttgttttcataa 101  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||    
T  40902231 aagttaaaaacagcttacaaacaatgtcttaagttgttttcataa 40902187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 37526242 - 37526161
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaa 123  Q
    ||||| |||| |||| ||| |||||||||||||  ||||||||||| ||||| ||||||| || ||||||| ||||| ||||    
T  37526242 gagagcttatggaaataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcacaa 37526161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 37690679 - 37690598
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaa 123  Q
    ||||| |||| |||| ||| |||||||||||||  ||||||||||| ||||| ||||||| || ||||||| ||||| ||||    
T  37690679 gagagcttatggaaataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcacaa 37690598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 8089983 - 8090039
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtct 118  Q
    |||||||||||||  || || ||||||||||||||||||| || |||||||||||||    
T  8089983 tgaaaacagcttaggaatatatcataagttgttttcataagctctctcaaatagtct 8090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 11700401 - 11700333
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||   |||||||||||||||||| |||||||| ||   |||||||| |||||||||||    
T  11700401 tgaaaacagcttatggacatgtcataagttgtttccataaactctcctcaatagtctcacaagtgctta 11700333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 37611275 - 37611175
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    |||||||| ||| | | ||||| |||| |||| ||  |||||||||||||  ||||||||| ||||||||||||||| || ||||||| | ||| |||||    
T  37611275 tttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaag 37611176  T
Q  125 t 125  Q
    |    
T  37611175 t 37611175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 37788005 - 37787905
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaag 124  Q
    |||||||| ||| | | ||||| |||| |||| ||  |||||||||||||  ||||||||| ||||||||||||||| || ||||||| | ||| |||||    
T  37788005 tttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaag 37787906  T
Q  125 t 125  Q
    |    
T  37787905 t 37787905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 342431 - 342345
Alignment:
Q  44 gagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||| | |||| ||| |||||||| ||||||||||||||||| |||||||   | |||| ||||||||||||  ||||| |||||    
T  342431 gagtttgtggaaataagctgaaaacaacttacaaacatgtcatacgttgtttatgtgaactttctcaaatagtcaaacaagcgctta 342345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 4619740 - 4619822
Alignment:
Q  48 ttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||| |||| ||| ||||| |||||||  |||||||||| |||||||||||||| || || |||| ||| || ||||||||||    
T  4619740 ttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgctta 4619822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 19369322 - 19369384
Alignment:
Q  24 gtttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcat 86  Q
    ||||||||||||  ||  ||||| ||||||||| || |||||||||||||||| |||||||||    
T  19369322 gtttcataaactttcccagagagcttatagaaataaattgaaaacagcttacagacatgtcat 19369384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 10272474 - 10272421
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttt 95  Q
    ||||||||||  ||| ||| |||||||| |||||| ||||||||||||||||||    
T  10272474 gagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgttt 10272421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 37489103 - 37489066
Alignment:
Q  64 aaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||  |||||||||||||||||||||||||    
T  37489103 aaaacagcttatcaacatgtcataagttgttttcataa 37489066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 37588403 - 37588322
Alignment:
Q  42 gagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaa 123  Q
    ||||| |||| |||| ||| |||||||||||||  ||||| ||||| ||||| ||||||| || ||||||| ||||| ||||    
T  37588403 gagagcttatggaaataagctgaaaacagcttattaacatttcataggttgtattcataagctctctcaaacagtctcacaa 37588322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 37794719 - 37794682
Alignment:
Q  64 aaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||||||  |||||||||||||||||||||||||    
T  37794719 aaaacagcttatgaacatgtcataagttgttttcataa 37794682  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 40864489 - 40864428
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcat 86  Q
    |||||||| ||| ||||||||  ||||||||| ||||| |||| | ||||||||||||||||    
T  40864489 tttcataatctatccttgagaccttatagaaataagttaaaaaaaacttacaaacatgtcat 40864428  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 41016228 - 41016293
Alignment:
Q  65 aaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||| || ||||||||| |||||||||||| |||||||| ||| | | |||| ||||||||||||    
T  41016228 aaacaactcacaaacatgccataagttgtttccataaactctcttatacagtcctacaagtgctta 41016293  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 42375347 - 42375302
Alignment:
Q  43 agagtttatagaaacaagttgaaaacagcttacaaacatgtcataa 88  Q
    |||| ||||||||| ||||| ||||||||||||||||||| |||||    
T  42375347 agagcttatagaaataagttaaaaacagcttacaaacatgccataa 42375302  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 10152397 - 10152449
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    |||||||||||||||||||||||| || ||  ||||||||| ||| |||||||    
T  10152397 acatgtcataagttgttttcataagctctccaaaatagtctcacatgtgctta 10152449  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 12467180 - 12467212
Alignment:
Q  62 tgaaaacagcttacaaacatgtcataagttgtt 94  Q
    ||||||||||||| |||||||||||||||||||    
T  12467180 tgaaaacagcttataaacatgtcataagttgtt 12467212  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 17368686 - 17368762
Alignment:
Q  25 tttcataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 101  Q
    |||||||| ||| | | ||||| |||| |||| ||| ||||||| || ||  |||||||||||||||||||||||||    
T  17368686 tttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataa 17368762  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 25079574 - 25079523
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||||||||||||||  ||||||| || |||||||||| |||||||||||    
T  25079574 acatgtcataagttgtttcgataaactctc-caaatagtctcacaagtgctta 25079523  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 25137543 - 25137492
Alignment:
Q  78 acatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 130  Q
    ||||||||||||||||||  ||||||| || |||||||||| |||||||||||    
T  25137543 acatgtcataagttgtttcgataaactctc-caaatagtctcacaagtgctta 25137492  T

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