View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_89 (Length: 240)
Name: NF9873_low_89
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_89 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22758964 - 22758742
Alignment:
| Q |
1 |
ttaaacctcatgccaacactaaatttttggttgatagcttccatatacttattcacacttataatgaactggctcatcctaagcaaaccaaaaacaatgc |
100 |
Q |
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| T |
22758964 |
ttaaacctcatgccaacactaaatttttggttgatagcttccatatacttattcacacttataatgaactggctcatcctaagcaaaccaaaaacaatgc |
22758865 |
T |
|
| Q |
101 |
ccttgtcaagatttatccatgaaagacggtttctagttatttttacaactagtaaaagttttacctgggcttgtagtatactacaaaaagagtttgagtt |
200 |
Q |
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| T |
22758864 |
ccttgtcaagatttatccatgaaagacggtttctagttatttttacaactagtaaaagttttacctgggcttgtagtatactacaaaaagagtttgagtt |
22758765 |
T |
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| Q |
201 |
gcaacagcatgagatgcggttgc |
223 |
Q |
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| T |
22758764 |
gcaacagcatgagatgcagttgc |
22758742 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 7075850 - 7075910
Alignment:
| Q |
151 |
agtaaaagttttacctgggcttgtagtatactacaaaaagagtttgagttgcaacagcatg |
211 |
Q |
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| T |
7075850 |
agtaaaatttatacctcggcttataatatacaacgaaaagagtctgagttgcaacagcatg |
7075910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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