View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_91 (Length: 239)

Name: NF9873_low_91
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_91
NF9873_low_91
[»] chr8 (3 HSPs)
chr8 (92-208)||(32916032-32916148)
chr8 (1-80)||(32915340-32915419)
chr8 (2-56)||(24945367-24945421)
[»] chr1 (1 HSPs)
chr1 (2-62)||(2308149-2308209)
[»] chr3 (1 HSPs)
chr3 (3-56)||(9359433-9359486)
[»] chr2 (1 HSPs)
chr2 (10-56)||(41195215-41195261)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-52)||(520164-520215)
[»] chr7 (1 HSPs)
chr7 (1-62)||(43805405-43805466)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 32916032 - 32916148
Alignment:
Q  92 aagaggtgggggaaatggtggtggaaattaaggtattatcgtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 191  Q
    ||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32916032 aagaggtgggggaaatggtggaggatattaagttattatggtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 32916131  T
Q  192 cttggtgttccgtttta 208  Q
    |||||||||||||||||    
T  32916132 cttggtgttccgtttta 32916148  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32915340 - 32915419
Alignment:
Q  1 aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915340 aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc 32915419  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 24945421 - 24945367
Alignment:
Q  2 aatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 56  Q
    ||||||| || ||||||||||| | ||||||||||||||||||||| ||||||||    
T  24945421 aatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaa 24945367  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 2308209 - 2308149
Alignment:
Q  2 aatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt 62  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2308209 aatggttcctcgcttgccaaatagcccatatagttgcatgccaaatgatccacaaaccttt 2308149  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 9359433 - 9359486
Alignment:
Q  3 atgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 56  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  9359433 atgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaa 9359486  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 41195215 - 41195261
Alignment:
Q  10 ctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 56  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  41195215 ctcgcttgccaaataacccaaatagtagcatgccaaataatccacaa 41195261  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 520164 - 520215
Alignment:
Q  1 aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatcc 52  Q
    |||||||| |||||||||||||| | |||||||||||||| |||||| ||||    
T  520164 aaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc 520215  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43805466 - 43805405
Alignment:
Q  1 aaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt 62  Q
    |||||||| ||| ||||||| ||| || ||| ||||||||||||||| ||||| ||||||||    
T  43805466 aaatgatttctcacttgccagataccctaaagagttgcatgccaaataatccataaaccttt 43805405  T

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