View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_92 (Length: 239)
Name: NF9873_low_92
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_92 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 5064720 - 5064829
Alignment:
| Q |
130 |
aaactaataaatacattttcgtgagataacaagtcttataaattccaacaaactgaaaagctaaactatagccagcgactcaaacacaagattaaacttt |
229 |
Q |
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| T |
5064720 |
aaactaataaatacattttcgtgagataacaagtcttataaattccaacaaactgaaaagctaaactatagccagcgactcaaacacaagattaaacttt |
5064819 |
T |
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| Q |
230 |
aaacatcctt |
239 |
Q |
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|||||||||| |
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| T |
5064820 |
aaacatcctt |
5064829 |
T |
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Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 5059235 - 5059353
Alignment:
| Q |
18 |
caaggattcaatcaaccggtgaactggctgattcccgtttcagtccagtttttaaaacactggcacaaagtgaatgttcatacttttctgaagggatgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
5059235 |
caaggattcaatcaaccggtgaactggctgattcccgtttcaatccagtttttaaaacattggcacaaagtgaatgttcatacttttcttaagggatgat |
5059334 |
T |
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| Q |
118 |
tttaccataagaaaactaa |
136 |
Q |
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||||||||||||||||||| |
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| T |
5059335 |
tttaccataagaaaactaa |
5059353 |
T |
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