View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_low_94 (Length: 234)
Name: NF9873_low_94
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_94 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 53130405 - 53130619
Alignment:
| Q |
18 |
actccaacactaaacctctttctaaaggttcaaaactcaagaaattactcaaagaagaaacagaacccatttct------------------cgctccaa |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53130405 |
actccaacactaaacctctttctaagggttcaaaactcaagaaattactcaaagaagaaacagaacccatttctcgtgccacttcagcttctcgctccaa |
53130504 |
T |
|
| Q |
100 |
agttaagaaggaactcaaggacgatgatgatgattccgacgaagacgacgatgacaaacctatcgccaaaaagatctccaaaaccaaggtacataatcga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53130505 |
agttaagaaggaactcaaggacgatgatgatgattccgacgaagacgacgatgacaaacctatcgcccaaaagatctccaaaaccaaggtacataatcga |
53130604 |
T |
|
| Q |
200 |
aattctcagacctag |
214 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
53130605 |
aattctcagacctag |
53130619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University