View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_high_10 (Length: 247)
Name: NF9874_high_10
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 21075253 - 21075154
Alignment:
| Q |
1 |
acacagtggcagagcaaaacacgctagagttaactacaaaccatcccaaaaggttctaccataataaaacttaaataaacccttatatttgttaccacaa |
100 |
Q |
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| T |
21075253 |
acacactggcagatcaaaacacgctagagttaactacaaaccgtcccaaaagattctaccataataaaacttaaataaacccttatatttgttaccacaa |
21075154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 21075100 - 21075033
Alignment:
| Q |
162 |
tttttagcgctataacaaagggttgcaaaacatggtttaaatcttataaacgaacacaatgatattat |
229 |
Q |
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| T |
21075100 |
tttttagcgctataacaaagggttgcaaaacatggttcaaatcttataaacgaacacaattatattat |
21075033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 21021417 - 21021319
Alignment:
| Q |
7 |
tggcagagcaaaacacgctagagttaactacaaaccatcccaaaaggttctaccataataaaacttaaataaacccttatatttgttaccacaagcaag |
105 |
Q |
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| T |
21021417 |
tggcagagcaaaacacgatggagttcattacaaaccgccccaaaaggttctactataataagacttaaataaacctatatatttgttaccacaagcaag |
21021319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 21021262 - 21021195
Alignment:
| Q |
162 |
tttttagcgctataacaaagggttgcaaaacatggtttaaatcttataaacgaacacaatgatattat |
229 |
Q |
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| T |
21021262 |
tttttagcgctacaacaatggtttgcaaaacacggttcaaatcttataaacgaacacagttatattat |
21021195 |
T |
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