View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_high_8 (Length: 262)
Name: NF9874_high_8
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 42131301 - 42131546
Alignment:
| Q |
16 |
gaatttggaagaaaatataatgttttgtataggtgaatttggaagagagtatacttccagataattttagtccaaatgaatttagaacataaaatcagcg |
115 |
Q |
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| T |
42131301 |
gaatttggaagaaaatttaatgttctgtataggtgaatttggaagagaatatacttccagataattttagtccaaatgaatttagaacataaaatcagcg |
42131400 |
T |
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| Q |
116 |
gtggataaattctctaaaattctaaagttaaaagtttaattttttatttagaaataggtgaacttaaattggttgattatggannnnnnncttgttaccc |
215 |
Q |
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| T |
42131401 |
gtggataaattctctaaaattttaaagttaaaagtttaattttttatttagaaataggtgaacttaaattggttgattatggatttttttcttgttaccc |
42131500 |
T |
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| Q |
216 |
agatttaaaaatga-ggatcacattttttaataagtacggtgtgac |
260 |
Q |
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| T |
42131501 |
agatttaaaaatgagggatcacattttttaataagtacggtgtgac |
42131546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 42131276 - 42131312
Alignment:
| Q |
25 |
agaaaatataatgttttgtataggtgaatttggaaga |
61 |
Q |
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| T |
42131276 |
agaaaatttaatgttttgtataggtgaatttggaaga |
42131312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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