View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_14 (Length: 245)
Name: NF9874_low_14
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 44041674 - 44041434
Alignment:
| Q |
7 |
tgagatggacatcacagtccccacaattttgatctggcttattgagcttccagcatccaacttctccatcctacaatggtttttgaaatagtaaaataat |
106 |
Q |
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| T |
44041674 |
tgagatagacaccacagtccccacaattttgatctggcttattgagcttccagcatccaacttctccatcctacaacggtttttgaaatagtaaaataat |
44041575 |
T |
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| Q |
107 |
ccaactgttatgcataattataagtttgcataagaacctctaaacatggttgtttatttatattttagtactatcaacacattatctaacac--attttc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44041574 |
ccaactgttatgcataattataagtttgcataagaacctctaaacatggttgtttatttatattttagtactatcaacacattatctaacacatattttc |
44041475 |
T |
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| Q |
205 |
caacacacctatttacctgaagatgactgctagaacaaaag |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
44041474 |
caacacacctatttacctgaagatgactgctagaacaaaag |
44041434 |
T |
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