View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_17 (Length: 241)
Name: NF9874_low_17
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 50549628 - 50549850
Alignment:
| Q |
19 |
tatagtcatgtcaaatataagactatagtcatgtcaaataaaaataacaaagaaatgtgacaaactttcctcnnnnnnnnnnnnnn---tgggaatgtga |
115 |
Q |
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| T |
50549628 |
tatagtcatgtcaaatataagactatagtcatgtcaaataaaaataacaaagaaatgtgacaaactttcctcaaacaaaaaaaaaaaaatgggaatgtga |
50549727 |
T |
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| Q |
116 |
caaactacaagtggtgatgatggatgcatgcatgtaaactcatattgccaggcatgatatataattaaaatttctcactttctggccaatatatatattg |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50549728 |
caaactacaagtggtgat---ggatgcatgcatgtaaactcatattgccaggcatgatatataattaaaatttctcactttctggccaatatatatattg |
50549824 |
T |
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| Q |
216 |
gaaaagagttgatgcaattttatttt |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
50549825 |
gaaaagagttgatgcaattttatttt |
50549850 |
T |
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