View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_3 (Length: 464)
Name: NF9874_low_3
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 2 - 450
Target Start/End: Original strand, 1429192 - 1429635
Alignment:
| Q |
2 |
tattggtgcaccgtaaaagggaacaaagtagtgatcattgtatttgtatgttaaatggagctcatataaatggaataaagatgaacttagaataacaagt |
101 |
Q |
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| T |
1429192 |
tattggtgcaccgtaaaagg-aacaaagtagtgatcattgtatttatatgttaaatggagctcatctaaatggaataaagatgaactcagaataacaagt |
1429290 |
T |
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| Q |
102 |
gtatgattttttctttnnnnnnnnnnnngtgtgatttcaattttacacaaaagtatctaaattcttctctcttcagtttttaaattttctttttgaatcc |
201 |
Q |
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| T |
1429291 |
gtatgattttttcttttaaaaaaaat--gtgtgatttcaattttacacaaaaatatctaaattcttctctcttcagtttttaaattttctttttgaatcc |
1429388 |
T |
|
| Q |
202 |
aaacacaagagagagtgaatgtacaagagaatcataaagcgaaatttctattaatccaacaattagtaggctaaatatacaaatatttgaatttgatggt |
301 |
Q |
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| T |
1429389 |
aaacac--gagagagtgaatgtacaagagaatcataaagtgaaatttatattaatccaacaattagtaggctaaatatacaaatatttgaatttgatggt |
1429486 |
T |
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| Q |
302 |
aaactactaagaatggatttcatgatgattcttaggatatagacaaaattatatcaaaaacagctagaacttgatcatagatgtgttttgtagttgattt |
401 |
Q |
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| T |
1429487 |
aaactactaagaatggatttcatgatgattcttaggatatagacaaaattatatcaaaaacagctagaacttgatcatagatgtgttttgtagttgattt |
1429586 |
T |
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| Q |
402 |
actttatgatactcaaatcgtcaaattcaaaccaaaacaaagaaggatt |
450 |
Q |
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| T |
1429587 |
actttatgatactcaaatcgtcaaattcaaaccaaaacaaagaaggatt |
1429635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 223 - 418
Target Start/End: Original strand, 1453773 - 1453970
Alignment:
| Q |
223 |
tacaagagaatcataaagcgaaatttctattaatccaacaattagtaggctaaatatacaaatatttgaatttgatggtaaactactaagaatggat--- |
319 |
Q |
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| T |
1453773 |
tacaagagaatcataaagtgggatttctcttaatccaacaattaatagcttaaatatataaatatttgaatttgatgttatattactaagaatgaattac |
1453872 |
T |
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| Q |
320 |
ttcatgatgattcttaggatatagacaaaattatatcaaaaacagctagaacttgatcatagatgtgttttgtagttgatttactttatgatactcaaa |
418 |
Q |
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| T |
1453873 |
ttcatgatgattcttaggatatag-caaaattgtatcaaaaacagcaaaaacttgattatagatgtgttttgtagttgattttcattatgatactcaaa |
1453970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 229 - 419
Target Start/End: Original strand, 1460423 - 1460602
Alignment:
| Q |
229 |
agaatcataaagcgaaatttctattaatccaacaattagtaggctaaatatacaaatatttgaatttgatggtaaactactaagaatggatttcatgatg |
328 |
Q |
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| T |
1460423 |
agaatcataaagtaagatttctcttaatccaacaattaatagcttaaatatataaatatttgaatttgatggtaaattactgagaatgaatt-------- |
1460514 |
T |
|
| Q |
329 |
attcttaggatatagacaaaattatatcaaaaacagctagaacttgatcatagatgtgttttgtagttgatttactttatgatactcaaat |
419 |
Q |
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| T |
1460515 |
---cttagggtatagacaaaattatatcaaaaacagctagaacttgattatagatgcgttttgtagttgattttctttataataatcaaat |
1460602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 229 - 382
Target Start/End: Complemental strand, 1556500 - 1556358
Alignment:
| Q |
229 |
agaatcataaagcgaaatttctattaatccaacaattagtaggctaaatatacaaatatttgaatttgatggtaaactactaagaatggatttcatgatg |
328 |
Q |
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| T |
1556500 |
agaatcataaagtaagatttctcttaatccaacaattaatagcttaaatatataaatatttgaatttgatggtaaattactgagaatg-----------a |
1556412 |
T |
|
| Q |
329 |
attcttaggatatagacaaaattatatcaaaaacagctagaacttgatcataga |
382 |
Q |
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| T |
1556411 |
attcttagggtatagacaaaattatatcaaaaacagctagaacttgattataga |
1556358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 1568015 - 1567893
Alignment:
| Q |
135 |
atttcaattttacacaaaagtatctaaattcttctctcttcagtttttaaattttctttttgaatccaaacacaagagagagtgaatgtacaagagaatc |
234 |
Q |
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||||| ||||||||||||||| |||||||||||||||| | ||||| |||||| ||||| |||||||||| |||||| | |||||||||| |
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| T |
1568015 |
atttccattttacacaaaagtctctaaattcttctctcctacatttttcaattttttttttcaatccaaacaaaagaga---------ttcaagagaatc |
1567925 |
T |
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| Q |
235 |
ataaagcgaaatttctattaatccaacaatta |
266 |
Q |
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|||||| | |||||| ||||||||||||||| |
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| T |
1567924 |
ataaagtgggatttctcttaatccaacaatta |
1567893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 1567893 - 1567851
Alignment:
| Q |
378 |
atagatgtgttttgtagttgatttactttatgatactcaaatc |
420 |
Q |
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||||||| |||||||||||||||| |||||| ||||||||||| |
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| T |
1567893 |
atagatgcgttttgtagttgattttctttataatactcaaatc |
1567851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 1749485 - 1749567
Alignment:
| Q |
273 |
taaatatacaaatatttgaatttgatggtaaactactaagaatggatttc---atgatgattcttaggatatagacaaaatta |
352 |
Q |
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|||||||| |||| ||||||| |||||||||| || | |||||| ||| | |||||||||||||||||||||||||||||| |
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| T |
1749485 |
taaatatataaatgtttgaatatgatggtaaattaatgagaatgaattactttatgatgattcttaggatatagacaaaatta |
1749567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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