View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_4 (Length: 462)
Name: NF9874_low_4
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 38127949 - 38127504
Alignment:
| Q |
11 |
ttggtatatttgtctgatctagtgagcagtggtcaccaccacctcaagaagaagaagaagcagttacaaactgtggagctaaaggtcagaatggactgtg |
110 |
Q |
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| T |
38127949 |
ttggaatatttgtctgatctagtgagcagtggtcaccaccacctcaagaagaagaagaagcagttacaaactgtggagctaaaggttagaatggactgtg |
38127850 |
T |
|
| Q |
111 |
atggttgtgggcttaaggtcaagaaaaccctatcttcactaagtggtaaagtaacattctttttaacttttcatcattttatattatcattttcaacatg |
210 |
Q |
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| T |
38127849 |
atggttgtgagcttaaggtcaagaaaaccctatcttcactaagtggtaaagtaacattctttttaacttttcatcattttatattatcattttcaacatg |
38127750 |
T |
|
| Q |
211 |
aagttgctgaaatgaaatggtgattgcaggggtacaatcagtggatataaaccgtaaacagcaaaaagtgacggtgactgggtttgtggatccaaacaag |
310 |
Q |
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| T |
38127749 |
aagttgctgaaatgaaatggtgattgcaggggtacaatcagtggatataaaccgtaaacagcaaaaagtgactgtgactgggtttgtggatccaaacaag |
38127650 |
T |
|
| Q |
311 |
gtgctgaagaaggctaagtcaacagggaagaaggctgaaatttggccttatgtgccatacaacttggtggctcaaccatatgctgtttcttcttatgaca |
410 |
Q |
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| T |
38127649 |
gtgctgaagaaggctaagtcaacagggaagaaggctgaaatttggccttatgtgccatacaacttggtggctcaaccatatgctgtttcttcttatgaca |
38127550 |
T |
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| Q |
411 |
agaaggctcctcctggttatgtgaggagagtggagaatgctccaac |
456 |
Q |
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| T |
38127549 |
agaaggctcctcctggttatgtgaggagagtggagaatgctccaac |
38127504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 235 - 444
Target Start/End: Complemental strand, 39763294 - 39763085
Alignment:
| Q |
235 |
tgcaggggtacaatcagtggatataaaccgtaaacagcaaaaagtgacggtgactgggtttgtggatccaaacaaggtgctgaagaaggctaagtcaaca |
334 |
Q |
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|||||| ||| |||||||||| |||||| | ||||| |||||||| || || || |||| |||||| |||| |||||||| ||||| || ||||||||| |
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| T |
39763294 |
tgcaggagtaaaatcagtggagataaacaggaaacaacaaaaagtaacagtaacggggtatgtggaggcaaataaggtgctaaagaaagcaaagtcaaca |
39763195 |
T |
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| Q |
335 |
gggaagaaggctgaaatttggccttatgtgccatacaacttggtggctcaaccatatgctgtttcttcttatgacaagaaggctcctcctggttatgtga |
434 |
Q |
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| T |
39763194 |
ggaaagaaggcagagatatggccttatgtgccatacaacatggtggttcatccatacgctgctccttcttatgacaagaaggctcctcctggatatgtaa |
39763095 |
T |
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| Q |
435 |
ggagagtgga |
444 |
Q |
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| T |
39763094 |
ggagattgga |
39763085 |
T |
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