View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_5 (Length: 408)
Name: NF9874_low_5
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 45901296 - 45901665
Alignment:
| Q |
21 |
cattgcaatttcctaacctaatttagagtaaaatttatttgtttcgtaattcatgcaagcaaatatttatttcgaaatctctgaagtatcacagtgcgtg |
120 |
Q |
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| T |
45901296 |
cattgcaatttcctaacctaatttagagtaaaagttatttgtttcgtaattcatccaagcaaatatttatttcgtaatctctgaagtatcacagtgtgtg |
45901395 |
T |
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| Q |
121 |
tttcaacatccaccatttttacttgaattttttacacgtcatttctagatgtaccacagaattgaatgccatactgagggcaaacctagcttacttctag |
220 |
Q |
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| T |
45901396 |
gttcaacatccaccatttttacttgaattttttacacgtcatttctagatgtaccacagaattgaatgccatactaagggcaaacctagcttacttctag |
45901495 |
T |
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| Q |
221 |
tccctaatgacctaaaccctgcaaaaatgctaaagaaatctcgaggaaacaacaccaaccaacctaaccacctaaaaattgtatacctcacccaagaaga |
320 |
Q |
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| T |
45901496 |
tccctaatgacctaaacactgcaaaaatgctaaagaaatctcgaggaaacaacaccaaccaacctaaccacctaaaaattgtatacctcacccaagaaga |
45901595 |
T |
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| Q |
321 |
gaaatcacaagtgacaaacacatcgctagatgtagcctcagaatagtaactgtttatttcaacacaaagt |
390 |
Q |
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| T |
45901596 |
gaaatcacaggtgacaaacacatcgctagatgtagcctcagaatagtaactgtttatttcaacacaaagt |
45901665 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 37421993 - 37421910
Alignment:
| Q |
256 |
aaatctcgaggaaacaacaccaaccaacctaaccacctaaaaattgtatacctcacccaagaagagaaatcacaagtgacaaaca |
340 |
Q |
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| T |
37421993 |
aaatctcgaggcaacaccaacactcacccaaaccacctaaaacttg-ataccacaccctcgaagagaaatcacaagtgacaaaca |
37421910 |
T |
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