View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_6 (Length: 392)
Name: NF9874_low_6
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_6 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 44 - 391
Target Start/End: Complemental strand, 21075581 - 21075249
Alignment:
| Q |
44 |
gaattaaacatccaaaataaatgtcacgatctttcgagctaacagcccaaagtgaaaatttatccaagacaacggagcaaaatcggataattgcagaacc |
143 |
Q |
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| T |
21075581 |
gaattaaacatccaaaataaaggccacgatctttcgagcta---gtccaaagtgaaaatttatccaagacaacgaagcataatcgggtaattatataacc |
21075485 |
T |
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| Q |
144 |
aaaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctgacgcgaaccacaagggaaacacattt |
243 |
Q |
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| T |
21075484 |
aaaccaacagaacaccaaaacatgacggaccgtgaatggccctct-----atccccttctcaaaaccagctctgacgcgaaccacaacggaaacacattt |
21075390 |
T |
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| Q |
244 |
ttgaatcacataatagcgacgtgccgacgtcgaatctgttaaaacaaaattgtttgtaagacacccaaacgaaactgacaacgtagatgcaacgcaccca |
343 |
Q |
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| T |
21075389 |
ttgaatcacataatagtgacgtgccaacgtcgaatctgttaaaacaaaattgtttgtaagacacccaaacgaaactgacaacatagatgcaacgc----- |
21075295 |
T |
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| Q |
344 |
cgccgtttttacactctatgccagaagcagcacagagaggagaacaca |
391 |
Q |
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| T |
21075294 |
--ccgtttttacactctatgccagaagcagcacagagaggagaacaca |
21075249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 21021800 - 21021560
Alignment:
| Q |
20 |
aacagtaagtctcaaccaccacttgaattaaacatccaaaataaatgtcacgatctttcgagctaacagcccaaagtgaaaatttatccaagacaacgga |
119 |
Q |
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| T |
21021800 |
aacagtaagtctcaacgaccacctgaattaaacatccaaaataaagtccacgatctttcaagctaacaatccaaagtgaaaatttgtccaagacaacgaa |
21021701 |
T |
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| Q |
120 |
gcaaaatcggataattgcagaaccaaaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctgac |
219 |
Q |
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| T |
21021700 |
gtaaaattggataatcacataaccaaaccaacataacaccaaaacaagacatatcgtgaatgtccatctatcccaaccccttctcaaaaccagctgcgac |
21021601 |
T |
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| Q |
220 |
gcgaaccacaagggaaacacatttttgaatcacataatagc |
260 |
Q |
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| T |
21021600 |
gcgaaccacaagagaaatgcatttttgaatcacagaatagc |
21021560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 21021517 - 21021431
Alignment:
| Q |
300 |
taagacacccaaacgaaactgacaacgtagatgcaacgcacccacgccgtttttacactctatgccagaagcagcacagagaggagaaca |
389 |
Q |
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| T |
21021517 |
taagacacacaaacgaaactgacgac-tagatgcaacacatccacgccatttttacact--attccagaagcagcaaaaagaggagaaca |
21021431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 21076057 - 21076021
Alignment:
| Q |
15 |
tcaacaacagtaagtctcaaccaccacttgaattaaa |
51 |
Q |
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| T |
21076057 |
tcaacaacagtaagtctcaatcaccacttgaattaaa |
21076021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 50725 - 50957
Alignment:
| Q |
18 |
acaacagtaagtctcaaccaccacttgaattaaacatccaaaataaatgtcacgatctttcgagctaacagcccaaagtgaaaatttatccaagacaacg |
117 |
Q |
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|||| ||||||||||||| |||| ||||| ||||||||| ||||| | ||| |||||||||| |||| ||||||||||| ||| ||| ||| ||| |
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| T |
50725 |
acaaaagtaagtctcaacggccacgtgaatcaaacatccaggataaaggccacattctttcgagccaacaatccaaagtgaaagtttgtcctagataact |
50824 |
T |
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| Q |
118 |
gagcaaaatcggataattgcagaaccaaaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctg |
217 |
Q |
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| T |
50825 |
aaacacaatcagataatcacagaatcagaccaacataacaccggaacaaagcgggccgtgaacgatcatatatcccagccccttctcaaaaccatcctca |
50924 |
T |
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| Q |
218 |
acgcgaaccacaagggaaacacatttttgaatc |
250 |
Q |
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| T |
50925 |
atgcgaaccaaaagggaaacacgtttttgaatc |
50957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 13169252 - 13169300
Alignment:
| Q |
188 |
tatcacatccccttctaaaaaccagctctgacgcgaaccacaagggaaa |
236 |
Q |
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| T |
13169252 |
tatcacatccccttctcaaaaccaaccccgacacgaaccacaagggaaa |
13169300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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