View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_7 (Length: 368)
Name: NF9874_low_7
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 50394034 - 50394387
Alignment:
| Q |
1 |
atatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394034 |
atatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaaca |
50394133 |
T |
|
| Q |
101 |
aagtacagatttcctcgtcctcttatgcttactttaacactctttatctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394134 |
aagtacagatttcctcgtcctcttatgcttactttaacactctttgtctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacg |
50394233 |
T |
|
| Q |
201 |
tagcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttgggctaaaatattatgcaactttgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
50394234 |
tagcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgta |
50394333 |
T |
|
| Q |
301 |
taattttggaagtgtagcaagtccacttggattatatgtgcttaatgtgaagat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394334 |
taattttggaagtgtagcaagtccacttggattatatgtgcttaatgtgaagat |
50394387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 50385615 - 50385968
Alignment:
| Q |
1 |
atatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50385615 |
atatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaaca |
50385714 |
T |
|
| Q |
101 |
aagtacagatttcctcgtcctcttatgcttactttaacactctttatctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50385715 |
aagtacagatttcctcgtcctcttatgcttactttaacactctttgtctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacg |
50385814 |
T |
|
| Q |
201 |
tagcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttgggctaaaatattatgcaactttgta |
300 |
Q |
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| T |
50385815 |
tagcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttggacttaaatattatgcaactttgta |
50385914 |
T |
|
| Q |
301 |
taattttggaagtgtagcaagtccacttggattatatgtgcttaatgtgaagat |
354 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
50385915 |
taattttggaagtgtagcaagtccccttggattatatgtgcttaatgtgaagat |
50385968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 50390760 - 50391108
Alignment:
| Q |
1 |
atatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390760 |
atatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaaca |
50390859 |
T |
|
| Q |
101 |
aagtacagatttcctcgtcctcttatgcttactttaacactctttatctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacg |
200 |
Q |
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|||||||||||||||||||||||||||||| |||| || |||||| |||| ||||| ||||||||| |||||||||||||||||||| |||||||||| | |
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| T |
50390860 |
aagtacagatttcctcgtcctcttatgctttctttgactctctttgtctcttgtgtgggacaccttttgatagcatttgatgtgccacagggtctctatg |
50390959 |
T |
|
| Q |
201 |
tagcttcagtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttgggctaaaatattatgcaactttgta |
300 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
50390960 |
tagcttcagttattatcggattttgttttggtgctcaatggccgttactttttgccattatatcagaactctttggacttaaatattatgcaactttgta |
50391059 |
T |
|
| Q |
301 |
taattttggaagtgtagcaagtccacttggattatatgtgcttaatgtg |
349 |
Q |
| |
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||||||||||||| || |||||||| |||| |||||||||||||||||| |
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| T |
50391060 |
taattttggaagtataacaagtccaattggcttatatgtgcttaatgtg |
50391108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 50407656 - 50407991
Alignment:
| Q |
13 |
aagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaacaaagtacagattt |
112 |
Q |
| |
|
|||||||||||| ||||| || ||||| || |||||||||||||||||| | ||||| || || ||||||||||||||| || |||||||||||| |||| |
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| T |
50407656 |
aagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaattt |
50407755 |
T |
|
| Q |
113 |
cctcgtcctcttatgcttactttaacactctttatctcatgtgttggacaccttctgatagcatttgatgtgccagagggtctctacgtagcttcagtga |
212 |
Q |
| |
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|| || || || ||| | || || | | ||| | || ||||| || ||| | ||||||| |||||||||| | | || |||| | |||||||| | |
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| T |
50407756 |
ccacgaccactcatgttcacattgattatgtttttatcctgtgtcggtcacttattgatagcctttgatgtgcaaaatggcatctattttgcttcagtaa |
50407855 |
T |
|
| Q |
213 |
ttattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttgggctaaaatattatgcaactttgtataattttggaag |
312 |
Q |
| |
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| |||||||||||||||||||| ||||||||||| |||||||||| || || || | |||||| | ||||||||| |||||||| || ||||| | |
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| T |
50407856 |
tcattggattttgttttggtgcacaatggccattggtttttgccataatttcggagttgtttgggttgaaatattattcaactttgatgaactttggtgg |
50407955 |
T |
|
| Q |
313 |
tgtagcaagtccacttggattatatgtgcttaatgt |
348 |
Q |
| |
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||||| |||||| ||||||||||| | |||||||| |
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| T |
50407956 |
ggtagctagtccaattggattatattttcttaatgt |
50407991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 41334950 - 41335065
Alignment:
| Q |
209 |
gtgattattggattttgttttggtgctcaatggccattactttttgccattatatcagaactttttgggctaaaatattatgcaactttgtataattttg |
308 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||| | ||||| || ||||| ||| ||||||| | ||||| ||| |||||||||| ||||||| |
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| T |
41334950 |
gtgattattggtttttgttttggagctcaatggccattgatgtttgcaatcatatccgaaatttttggattgaaatactattcaactttgtacaattttg |
41335049 |
T |
|
| Q |
309 |
gaagtgtagcaagtcc |
324 |
Q |
| |
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|| ||| |||||||| |
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| T |
41335050 |
gagctgtggcaagtcc |
41335065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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