View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9874_low_9 (Length: 317)
Name: NF9874_low_9
Description: NF9874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9874_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 8641474 - 8641270
Alignment:
| Q |
22 |
tctggaggattaactttagataaagagtttttcaatccaacaatatatttcatcacaccttccctagagagagatccttcttggtcatggttccctaaaa |
121 |
Q |
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| T |
8641474 |
tctggaggattgactttagataaagagtttttcaatccaacaatatatttcatcacaccttccctagagagtgatccttcttggtcatggttccctaaaa |
8641375 |
T |
|
| Q |
122 |
cagccacccaaggaatgtttgattcaattgcaggagcaaatgcagcgtccatcgatttagccgaatccgaggaatcatgaccatagatgttatctcctgt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8641374 |
cagccacccaaggaatgtttgattcaattgcaggagcaaatgcagcgtccatcgatttagccgaatccgaggaatcatgaccatagatgttatctcctgt |
8641275 |
T |
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| Q |
222 |
catac |
226 |
Q |
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||||| |
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| T |
8641274 |
catac |
8641270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 8648054 - 8647850
Alignment:
| Q |
22 |
tctggaggattaactttagataaagagtttttcaatccaacaatatatttcatcacaccttccctagagagagatccttcttggtcatggttccctaaaa |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8648054 |
tctggaggattgactttagataaagagtttttcaatccaacaatatatttcatcacaccttccctagagagtgatccttcttggtcatggttccctaaaa |
8647955 |
T |
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| Q |
122 |
cagccacccaaggaatgtttgattcaattgcaggagcaaatgcagcgtccatcgatttagccgaatccgaggaatcatgaccatagatgttatctcctgt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
8647954 |
cagccacccaaggaatgtttgattcaattgcaggagcaaatgcagcgttcatcgatttagccgaatccgaggaatcatagccatagatattatctcctgt |
8647855 |
T |
|
| Q |
222 |
catac |
226 |
Q |
| |
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||||| |
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| T |
8647854 |
catac |
8647850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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