View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_high_1 (Length: 566)
Name: NF9875_high_1
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 42990872 - 42990471
Alignment:
| Q |
19 |
ttagatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42990872 |
ttagatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtttccagcaaccagtttgagttgcatatcaattctaccgaataagta |
42990773 |
T |
|
| Q |
119 |
ctctttcttggactggaagccagagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
42990772 |
ctctttcttggactggaagccagagccggagactttgtcgagagaaagtgaaagaagctgaccaccgttgaatgtcttagcacggtgatcgccccatgtt |
42990673 |
T |
|
| Q |
219 |
agatcaaaatcttggtagaaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatattgttcatgcgaatataagaagaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42990672 |
agatcaaaatcttggtagaaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatacagttcatgcgaatataagaagaag |
42990573 |
T |
|
| Q |
319 |
ccattaataattaattgaacaaagaaatgtgtgagtgagaaatgttgatgtaattgttgcaatgtgaaggatgtgttagaattagaaaagagggtctata |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42990572 |
ccattaataattaattgaacacggaaatgtgtgagtgagaaatgttggtgtaattgttgcaatgtgaaggatgtgttagaattagaaaagagggtctata |
42990473 |
T |
|
| Q |
419 |
ta |
420 |
Q |
| |
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|| |
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|
| T |
42990472 |
ta |
42990471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 35016439 - 35016245
Alignment:
| Q |
45 |
tagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagc |
144 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| | || || |||||||||||||| || |||| ||||||| |||| || | ||||||||||| |
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| T |
35016439 |
tagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagccagagc |
35016340 |
T |
|
| Q |
145 |
cggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaa |
239 |
Q |
| |
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| ||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
35016339 |
cagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagcacggttatcaccccatgttagatcaaagtcttggtagaaa |
35016245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 430 - 554
Target Start/End: Complemental strand, 42988704 - 42988586
Alignment:
| Q |
430 |
gagatagagtacgttagggaaattggaatgggaatgggaatgtaatgtagggtggtgaaacgcgtgaatggagtactcctaagagctggtgccaactttg |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
42988704 |
gagatagagtacgttagggaaattggaatgggaatg------taatgtagggtggtgaaacgcgtgaatggagtactcctaaaagctggcgccaactttg |
42988611 |
T |
|
| Q |
530 |
caagctggaaccttttgtttggtct |
554 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
42988610 |
caagctggaaccttttgtttggtct |
42988586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 37 - 497
Target Start/End: Original strand, 38218909 - 38219387
Alignment:
| Q |
37 |
tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaa |
136 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |
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| T |
38218909 |
tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaa |
38219008 |
T |
|
| Q |
137 |
gccagagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtag |
236 |
Q |
| |
|
||||||||| || ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| | |
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|
| T |
38219009 |
gccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttg |
38219108 |
T |
|
| Q |
237 |
aaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatattgttcatgcgaatataagaagaagccattaataattaa-ttg |
335 |
Q |
| |
|
|| || ||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||| ||| ||||||| ||| || ||||||| ||| |
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|
| T |
38219109 |
aagttagcagaacatgtagctaccaaggagctaattatcataactccaatcagcatattgtttatgccaat---agaagaaacca-tattaattaatttg |
38219204 |
T |
|
| Q |
336 |
aacaaagaaa--------------tgtgtgagtgagaaatgttgatgtaattgttgcaa--tgtgaaggatgtgttagaattagaaaagagggtctatat |
419 |
Q |
| |
|
||| ||||| |||||||| ||||||| || |||||||||||| | |||||||||||||||||||| |||||||||||||||||| |
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| T |
38219205 |
cacagagaaatgtgtgtgtgtgtgtgtgtgagagagaaatattaatgtaattgttgtgatgtgtgaaggatgtgttagaataagaaaagagggtctatat |
38219304 |
T |
|
| Q |
420 |
atatgtgtgtgagatagagtacgttagggaaattggaatggga-------atgggaatgtaatgtagggtggtgaaacgcgtgaa |
497 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |
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| T |
38219305 |
ata--tgtgtgagatagagtacgttagggaaattggaatgagaatatgttatgggaatgtaatgtagggtggtgagacgcgtgaa |
38219387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 41 - 427
Target Start/End: Original strand, 38214692 - 38215087
Alignment:
| Q |
41 |
tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagcca |
140 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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|
| T |
38214692 |
tacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagcca |
38214791 |
T |
|
| Q |
141 |
gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaat |
240 |
Q |
| |
|
||||| || ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| ||| | |
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|
| T |
38214792 |
gagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagt |
38214891 |
T |
|
| Q |
241 |
ttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatattgttcatgcgaatataagaagaagccattaataattaa-ttgaaca |
339 |
Q |
| |
|
| ||| |||||||||||| ||||||||||| |||||| |||||||||||||| |||| |||| ||| |||| |||||| || ||||||| ||| ||| |
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|
| T |
38214892 |
tagcagaacatgtagctaccaaggagctaattatcatgactccaatcagcatactgttaatgccaat---agaataagcca-tattaattaatttgcaca |
38214987 |
T |
|
| Q |
340 |
aagaaa----------tgtgtgagtgagaaatgttgatgtaattgttgcaa--tgtgaaggatgtgttagaattagaaaagagggtctatatatatgtgt |
427 |
Q |
| |
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||||| |||||||| ||||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38214988 |
gagaaatgtgtgtgtgtgtgtgagagagaaatattaatgtaattgttgtgatgtgtgaaggatgtgttagaattagaaaagagggtctatatatgtgtgt |
38215087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 37188472 - 37188272
Alignment:
| Q |
41 |
tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagcca |
140 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||| |||| ||| | ||| || |||||||||||| | || || | ||| || || ||||| || || ||| |
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|
| T |
37188472 |
tacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaacca |
37188373 |
T |
|
| Q |
141 |
gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaat |
240 |
Q |
| |
|
||||| ||| |||||| ||||| | | |||||| || ||| ||||| ||| |||||||| ||| |||||||||| |||||| ||||| || |||| |
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|
| T |
37188372 |
gagccagaggatttgtcaagagacaaagtaagaagttggccattgttgagtattttagcacgtccatccccccatgttatatcaaagtcttgataaaaat |
37188273 |
T |
|
| Q |
241 |
t |
241 |
Q |
| |
|
| |
|
|
| T |
37188272 |
t |
37188272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 53494838 - 53494776
Alignment:
| Q |
41 |
tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat |
103 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| || | ||||| ||||||||||| |
|
|
| T |
53494838 |
tacatagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaat |
53494776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 53501937 - 53501885
Alignment:
| Q |
51 |
gcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat |
103 |
Q |
| |
|
|||||||| || |||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
53501937 |
gcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat |
53501885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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