View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9875_high_12 (Length: 250)
Name: NF9875_high_12
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 42094953 - 42094744
Alignment:
| Q |
19 |
tttttgaaacattgtgtttgcatcaggcttgccttgatttgaagctgtatatattttgttgttttccacttctttgtctatagtacatcctctgtcgctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42094953 |
tttttgaaacattgtgtttgcatcaggcttgccttgatttgaagctgtatatattttgttgttttccacttctttgtctatagtacatcctctgtcgctg |
42094854 |
T |
|
| Q |
119 |
atatttgttgtagtatcttatcttgcttgacaacatgtaattacctcttaattatttaacatatgatattggtttttgaaatgaacatatgaatctgcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42094853 |
atatttgttgtagtatcttatcttgcttgataacatgtaattacctcttaattatttaacatatgatattggtttttgaaatgaacatatgaatctgcta |
42094754 |
T |
|
| Q |
219 |
ttatttttca |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
42094753 |
ttatttttca |
42094744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 6957875 - 6958009
Alignment:
| Q |
73 |
tttgttgttttccacttctttgtctatagtacatcctctgtcgctgatatttgttgtagtatcttatcttgcttgacaacatgtaattacctcttaatta |
172 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||| | |||||||||||||| ||| ||||| | ||||||| |
|
|
| T |
6957875 |
tttgttgtttttcacttctttgtctatagtacatcatgtgttgatgatatttgttgttg-----tatcttgcttgacattgtgt-attacatgttaatta |
6957968 |
T |
|
| Q |
173 |
tttaacatatgatattggtttttgaaatgaacatatgaatct |
214 |
Q |
| |
|
|||||||| |||| | |||||||||| |||||||||||||| |
|
|
| T |
6957969 |
tttaacatttgat-tctgtttttgaaaggaacatatgaatct |
6958009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 4352122 - 4352183
Alignment:
| Q |
79 |
gttttccacttctttgtctatagtacatcctc---tgtcgctgatatttgttgtagtatctt |
137 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
4352122 |
gtttttcacttctttgtctatagtacctcctcctatgttgctaatatttgttgtagtatctt |
4352183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 1660962 - 1660907
Alignment:
| Q |
173 |
tttaacatatgatattggtttttgaaatgaacatatgaatctgctattatttttca |
228 |
Q |
| |
|
||||||||||| | ||||| ||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
1660962 |
tttaacatatggttttggtgtttgaaaggaacatatgaatctgttataatttttca |
1660907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 35164099 - 35164154
Alignment:
| Q |
173 |
tttaacatatgatattggtttttgaaatgaacatatgaatctgctattatttttca |
228 |
Q |
| |
|
||||||||||| | ||||| ||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
35164099 |
tttaacatatggttttggtgtttgaaaggaacatatgaatctgttataatttttca |
35164154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University