View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_high_20 (Length: 237)
Name: NF9875_high_20
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37091829 - 37091606
Alignment:
| Q |
1 |
atatttcgcgtagtaaatgtgtcacgcagttaatgatctcgaccgtcttatttaaatcaatagttaagatcgtttaaaattaatttatttaatgtgtgag |
100 |
Q |
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| T |
37091829 |
atatttcgtgtagtaaatgtgtcacgcagttaatgatctcgaccgtcttatttaaatctttagttaagatcgtttaaaattaatttattgaatgtgtgag |
37091730 |
T |
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| Q |
101 |
ctaagtcgtctgatctcaattcaatgacttctgctatcattttgtgccatttgagaagtagtgttcaatatttgagaaatctcacataaactataagtat |
200 |
Q |
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| T |
37091729 |
ctaagtcgtctgatctcaattcaatgtcttctgctatcattttgtgccatttgagaagtagtgttcaatatttgagaaatctcacataaactataagtat |
37091630 |
T |
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| Q |
201 |
atttatatttatgtatttcttctt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
37091629 |
atttatatttatgtatttcttctt |
37091606 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 54634144 - 54634187
Alignment:
| Q |
44 |
cgtcttatttaaatcaatagttaagatcgtttaaaattaattta |
87 |
Q |
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| T |
54634144 |
cgtctgatttaaatcaatagttaaaatcgtttaaaattgattta |
54634187 |
T |
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