View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_high_21 (Length: 230)
Name: NF9875_high_21
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3573818 - 3573601
Alignment:
| Q |
1 |
ttgattgccaattccatgacactgatagtactttctgtgatagcaaaacttttgatcataaattcataattgatcaaatcattatagcagtacaacttaa |
100 |
Q |
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| T |
3573818 |
ttgattgccaaatccatgacactgataatactttctgtgatagcaaaacttttgatcataaattcataattgatcaaatcattatagcagtacaacttaa |
3573719 |
T |
|
| Q |
101 |
tcatccatagaacaaagttaaatgagcaagataagttaaattgacccttgaactacaattctgctgcatgaatcggagctggtcatacaatcaaccatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573718 |
tcatccatagaacaaagttaaatgagcaagataagttaaattgacccttgaactacaattctgctgcatgaatcggagctggtcatacaatcaaccatgc |
3573619 |
T |
|
| Q |
201 |
cgtccgttttcttctctg |
218 |
Q |
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|||||||||||||||||| |
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| T |
3573618 |
cgtccgttttcttctctg |
3573601 |
T |
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