View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_high_27 (Length: 209)
Name: NF9875_high_27
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 20271591 - 20271768
Alignment:
| Q |
20 |
ttatccccctcaagaaaacttcttgtactttatcacatcttatgagtttagtatc---tattatacttatttctgaacttaataaattttctttgttgtt |
116 |
Q |
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| T |
20271591 |
ttatccccctcaagaaaacttcttgtactttatcacatcttatgagtttagtatctattattatacatatttctgaacttaataaattttctttgttgtt |
20271690 |
T |
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| Q |
117 |
agg--nnnnnnnntataatcgaagtttcaatccaggcagagaaaggtaataaaatttagtattctacaatctcctatg |
192 |
Q |
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| T |
20271691 |
aggaaaaaaaaaatataatcgaagtttcaatccaggcagagaaaggtaataaaatttagtgttctacaatctcctatg |
20271768 |
T |
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