View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_high_6 (Length: 376)
Name: NF9875_high_6
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_high_6 |
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| [»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 6333239 - 6333592
Alignment:
| Q |
8 |
aagcagagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaat |
107 |
Q |
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||||| |||| |||||| | ||||||||||||||||| |||||||| || ||||| | ||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
6333239 |
aagcaaagatgaagatcaacaaacccaaataaatccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaat |
6333338 |
T |
|
| Q |
108 |
gatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatc |
207 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6333339 |
gatcatcttggaaggaaagaaactcttgatgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatc |
6333438 |
T |
|
| Q |
208 |
ataattgggttgatatcagcttgagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6333439 |
ataattgggttgatatcagcttgagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataatt |
6333538 |
T |
|
| Q |
308 |
ttcccacttctttcaatctagaaatggttgaatgaattcaagaaagtaaatgtt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6333539 |
ttcccacttctttcaatctagaaatggttgaatgaattcaagaaagtaaatgtt |
6333592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 6325762 - 6326106
Alignment:
| Q |
8 |
aagcagagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaat |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325762 |
aagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaat |
6325861 |
T |
|
| Q |
108 |
gatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatc |
207 |
Q |
| |
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||||||||||||||||| ||| || |||||||||| ||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325862 |
gatcatcttggaaggaatgaatctcttgatgtgaatatgtatcattgttacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatc |
6325961 |
T |
|
| Q |
208 |
ataattgggttgatatcagcttgagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataatt |
307 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325962 |
ataattgttttgatatcagcttgagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataatt |
6326061 |
T |
|
| Q |
308 |
ttcccacttctttcaatctagaaatggttgaatgaattcaagaaa |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6326062 |
ttcccacttctttcaatctagaaatggttgaatgaattcaagaaa |
6326106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 6242908 - 6242589
Alignment:
| Q |
8 |
aagcagagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaat |
107 |
Q |
| |
|
||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
6242908 |
aagcaaagattaagatccacaaacccaaataaatccaagcaattgtcggcgaaat----------gctaaaattgaaataacacttccaagtaaaagaat |
6242819 |
T |
|
| Q |
108 |
gatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatc |
207 |
Q |
| |
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| |||| || | |||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||||| |
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| T |
6242818 |
taccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaaagaaaaatagcgaaaaccaaagccatc |
6242719 |
T |
|
| Q |
208 |
ataattgggttgatatcagcttgagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataatt |
307 |
Q |
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|| ||| | |||| ||||| || ||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
6242718 |
at--------------cag-tagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaattggccaaataatt |
6242634 |
T |
|
| Q |
308 |
ttcccacttctttcaatctagaaatggttgaatgaattcaagaaa |
352 |
Q |
| |
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||| ||||| ||||||||||||| |||||||||||||||||||| |
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| T |
6242633 |
ctccaacttcattcaatctagaaagggttgaatgaattcaagaaa |
6242589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 6346367 - 6346690
Alignment:
| Q |
19 |
aagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttgg |
118 |
Q |
| |
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|||||||| || |||||| ||||||| |||||||| || ||||| | ||| ||||||| || ||||||||||||||||||||||| ||| | |||| || |
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| T |
6346367 |
aagatccacaagcccaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatga |
6346466 |
T |
|
| Q |
119 |
aaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcataattgggtt |
218 |
Q |
| |
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| |||||||| | |||||||||| || | || |||||||||||||||| ||| ||||||||||| |||||||||||| |||||||||| || ||| | |
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| T |
6346467 |
atggaaggaagttcttgatgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtgg--t |
6346564 |
T |
|
| Q |
219 |
gatatcagcttgagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttct |
318 |
Q |
| |
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||| ||| | ||||||| ||| || | |||||||| || ||||| ||||||||||| |||||||||| |||| |||||| ||||| |
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| T |
6346565 |
gat-------------ttttcgatacttgtattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttca |
6346651 |
T |
|
| Q |
319 |
ttcaatctagaaatggttgaatgaattcaagaaagtaaa |
357 |
Q |
| |
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||||| ||||||| |||||||| ||||||||||| |||| |
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| T |
6346652 |
ttcaagctagaaagggttgaataaattcaagaaaataaa |
6346690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 6219743 - 6219545
Alignment:
| Q |
19 |
aagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttgg |
118 |
Q |
| |
|
|||||||| || | |||| ||||||| |||||||| || ||||| | ||| ||||||| || ||||||||||||||||||||||| ||| | |||| || |
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|
| T |
6219743 |
aagatccacaagcacaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatga |
6219644 |
T |
|
| Q |
119 |
aaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcataattgggt |
217 |
Q |
| |
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| |||||||| || |||||||||| || |||| ||| | |||||||||| ||| | || |||||| ||||||||||||||| | ||||||||| |||| |
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| T |
6219643 |
atggaaggaagctcttgatgtgaatctgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaatgtcatcataatcgggt |
6219545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 1106 - 992
Alignment:
| Q |
28 |
aaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaagga |
127 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||| || | || |||| |
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|
| T |
1106 |
aaacccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggagga |
1007 |
T |
|
| Q |
128 |
aactattgatgtgaa |
142 |
Q |
| |
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||||||||||||||| |
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|
| T |
1006 |
aactattgatgtgaa |
992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 908 - 827
Alignment:
| Q |
259 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaat |
340 |
Q |
| |
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|||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||||||||| |||||||| |
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| T |
908 |
gcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaat |
827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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