View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9875_high_7 (Length: 372)

Name: NF9875_high_7
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9875_high_7
NF9875_high_7
[»] chr8 (8 HSPs)
chr8 (91-364)||(29357651-29357924)
chr8 (30-92)||(29357981-29358044)
chr8 (40-91)||(4298888-4298939)
chr8 (40-89)||(15816131-15816180)
chr8 (40-89)||(22651984-22652033)
chr8 (40-92)||(11927088-11927140)
chr8 (41-89)||(31236580-31236628)
chr8 (40-92)||(33405386-33405438)
[»] chr7 (7 HSPs)
chr7 (40-90)||(38143230-38143280)
chr7 (40-89)||(3721101-3721150)
chr7 (33-89)||(15902830-15902886)
chr7 (40-89)||(11061078-11061127)
chr7 (40-89)||(19206058-19206107)
chr7 (40-89)||(24146824-24146873)
chr7 (40-89)||(42720892-42720941)
[»] chr6 (5 HSPs)
chr6 (40-89)||(33001291-33001340)
chr6 (47-89)||(21424811-21424853)
chr6 (40-89)||(7086803-7086852)
chr6 (40-89)||(9617442-9617491)
chr6 (40-88)||(9629392-9629440)
[»] chr1 (3 HSPs)
chr1 (45-89)||(16164322-16164366)
chr1 (39-91)||(33230731-33230783)
chr1 (39-91)||(1864881-1864933)
[»] chr5 (3 HSPs)
chr5 (39-89)||(23012409-23012459)
chr5 (40-89)||(22423814-22423863)
chr5 (33-89)||(38749558-38749614)
[»] chr4 (4 HSPs)
chr4 (45-91)||(44081584-44081630)
chr4 (40-89)||(7214524-7214573)
chr4 (40-89)||(33950144-33950193)
chr4 (40-89)||(56110814-56110863)
[»] chr3 (3 HSPs)
chr3 (40-90)||(39756243-39756293)
chr3 (40-89)||(7928458-7928507)
chr3 (39-91)||(24633402-24633454)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 91 - 364
Target Start/End: Complemental strand, 29357924 - 29357651
Alignment:
Q  91 cataaattaacttacataccgtccaataaataaacaatcttgagaggcgatccttatagagattctcgtagacctgcataaaattaatattactcgaact 190  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29357924 catagattaacttacataccgtccaataaataaacaatcttgagaggcgatccttatagagattctcgtagacctgcataaaattaatattacttgaact 29357825  T
Q  191 tataacttgcttgataaaaaataggtatatgaatagtgagagatagatatttagcatgcctgccaaccaacttcaacagtttctccagattgagaggaaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29357824 tataacttgcttgataaaaaataggtatatgaatagtgagagatagatatttagcatgcctgccaaccaacttcaacagtttctccagattgagaggaaa 29357725  T
Q  291 gagatattttagccaaactgtattcatctttattttctgttttggggctccatacgtttaggttagcctttgct 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29357724 gagatattttagccaaactgtattcatctttattttctgttttggggctccatacgtttaggttagcctttgct 29357651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 29358044 - 29357981
Alignment:
Q  30 gtgcgacagaacaccgacacatataaatatattaaattatgtgagtttttc-aaattattaaca 92  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  29358044 gtgcgacaggacaccgacacatataaatacattaaattatgtgagtttttcaaaattattaaca 29357981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 4298888 - 4298939
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 91  Q
    |||||||||| | ||| || |||||||||||||| |||||||||||||||||    
T  4298888 acaccgacacttgtaattacattaaattatgtgattttttcaaattattaac 4298939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 15816131 - 15816180
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||| ||||| || | |||||||||||| |||||||||||||||    
T  15816131 acaccgacacttataattacactaaattatgtgattttttcaaattatta 15816180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 22652033 - 22651984
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||| | ||| |||||| |||||||||| |||||||||||||||    
T  22652033 acaccgacacttgtaattatattgaattatgtgattttttcaaattatta 22651984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 11927088 - 11927140
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaaca 92  Q
    |||||||||||||||| || | | |||||||||| ||| ||||||||||||||    
T  11927088 acaccgacacatataattacactgaattatgtgattttatcaaattattaaca 11927140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  41 caccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    ||||||||||||||| || ||| |||||||||| ||| |||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 33405386 - 33405438
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaaca 92  Q
    |||||||||||||||| || | |||||||||||  ||| ||||||||||||||    
T  33405386 acaccgacacatataattacactaaattatgtgtttttctcaaattattaaca 33405438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 38143280 - 38143230
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaa 90  Q
    ||||| |||||||||| || |||||||||||||| ||||||||||||||||    
T  38143280 acaccaacacatataattacattaaattatgtgattttttcaaattattaa 38143230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 3721150 - 3721101
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| |||| |||||||||||| ||| |||||||||||    
T  3721150 acaccgacacatataattatactaaattatgtgattttctcaaattatta 3721101  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 15902886 - 15902830
Alignment:
Q  33 cgacagaacaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    ||||| ||||||||||||||||| || | |||||||||||| ||| |||||||||||    
T  15902886 cgacacaacaccgacacatataattacactaaattatgtgattttatcaaattatta 15902830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 11061078 - 11061127
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||| | ||| |||| |||||||||||| |||||||||||||||    
T  11061078 acaccgacacttgtaattatactaaattatgtgattttttcaaattatta 11061127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 19206107 - 19206058
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| |||| | |||||||||| ||| |||||||||||    
T  19206107 acaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| |||||| |||||||||| ||| | |||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 42720892 - 42720941
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||| ||||||||||| || ||| |||||||||| |||||||||||||||    
T  42720892 acactgacacatataattacatttaattatgtgattttttcaaattatta 42720941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 33001291 - 33001340
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| || ||| |||||||||| |||||||||||||||    
T  33001291 acaccgacacatataattacatttaattatgtgattttttcaaattatta 33001340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 21424811 - 21424853
Alignment:
Q  47 cacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| | |||||||| |||||||||||||||    
T  21424811 cacatataaatatattgacttatgtgattttttcaaattatta 21424853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 7086852 - 7086803
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| || | |||||||||||| ||| |||||||||||    
T  7086852 acaccgacacatataattacactaaattatgtgattttctcaaattatta 7086803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| || ||| |||||||||| ||| |||||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatt 88  Q
    |||||||||||||||| || ||| |||||||||| ||| ||||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 16164322 - 16164366
Alignment:
Q  45 gacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    ||||||||||| || |||||||||||||| |||||||||||||||    
T  16164322 gacacatataattacattaaattatgtgattttttcaaattatta 16164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 33230783 - 33230731
Alignment:
Q  39 aacaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 91  Q
    ||||||||||||||||  || |||||||||||| | |||||||||||||||||    
T  33230783 aacaccgacacatatatttacattaaattatgtaaatttttcaaattattaac 33230731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 1864881 - 1864933
Alignment:
Q  39 aacaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 91  Q
    ||||||||||||||||| || | | |||||||||| ||| |||||||||||||    
T  1864881 aacaccgacacatataattacactgaattatgtgattttctcaaattattaac 1864933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 23012409 - 23012459
Alignment:
Q  39 aacaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    ||||||||||||||||| || |||||||||| ||| ||| |||||||||||    
T  23012409 aacaccgacacatataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 22423814 - 22423863
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    ||||||||| |||||| |||||| |||||||||| ||| |||||||||||    
T  22423814 acaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 38749558 - 38749614
Alignment:
Q  33 cgacagaacaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    ||||| |||||| |||||||||| || ||| |||||||| | |||||||||||||||    
T  38749558 cgacacaacaccaacacatataattacattgaattatgtcattttttcaaattatta 38749614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 44081584 - 44081630
Alignment:
Q  45 gacacatataaatatattaaattatgtgagtttttcaaattattaac 91  Q
    ||||||||||| || |||||||||| ||| |||||||||||||||||    
T  44081584 gacacatataattacattaaattatatgattttttcaaattattaac 44081630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 7214524 - 7214573
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||| ||||||| || |||||||||||||| ||| |||||||||||    
T  7214524 acaccgacgcatataattacattaaattatgtgattttctcaaattatta 7214573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 33950193 - 33950144
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||| | || |||||||||||||| ||| |||||||||||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 56110863 - 56110814
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| |||||| ||||||||||  ||| ||||||||||    
T  56110863 acaccgacacatataattatattgaattatgtgatgtttacaaattatta 56110814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 39756293 - 39756243
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaa 90  Q
    |||||||||| | ||| ||||||||||||||||| ||||| ||||||||||    
T  39756293 acaccgacacttgtaattatattaaattatgtgatttttttaaattattaa 39756243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 7928507 - 7928458
Alignment:
Q  40 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 89  Q
    |||||||||||||||| || | | |||||||||| |||||||||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattttttcaaattatta 7928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 24633402 - 24633454
Alignment:
Q  39 aacaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 91  Q
    ||||||||||||||||| || ||| ||||| |||| |||| ||||||||||||    
T  24633402 aacaccgacacatataattacattgaattacgtgatttttccaaattattaac 24633454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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