View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_low_10 (Length: 337)
Name: NF9875_low_10
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 4756362 - 4756038
Alignment:
| Q |
12 |
aatagatagaagagtacctagaaacaaggttattgatgaaggaatcaggatcag---acttgaaggctttgaggaaggtaggcatgttgccaaggaaagg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||| |||| |||||| |
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| T |
4756362 |
aatagatagaagagtacctagaaacaaggttattgatgaaggaatcaggatcagcagatttgaaagctttaaggaaggtaggcatgttaccaaagaaagg |
4756263 |
T |
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| Q |
109 |
ccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctccttaggaaaccaaacacaaatgcatat |
208 |
Q |
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| T |
4756262 |
ccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctccttaggaaaccaaacacaaatgcatat |
4756163 |
T |
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| Q |
209 |
ccacccaacaaagctgctactaggatcaaccattg---agaatctagcgacaccatttttcttcttcttcc--tatgtctataattagtaaacccctttt |
303 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
4756162 |
ccacccaacaaagctgctactaggatcaaccattgggaataatctagcaacaccattttttttcttcttcctatatgtctataattagtaaacccctttt |
4756063 |
T |
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| Q |
304 |
tatagagctatttttgggactccta |
328 |
Q |
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|||||| |||||||||||||||||| |
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| T |
4756062 |
tatagaactatttttgggactccta |
4756038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 82 - 248
Target Start/End: Complemental strand, 4746683 - 4746517
Alignment:
| Q |
82 |
gaaggtaggcatgttgccaaggaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
181 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4746683 |
gaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
4746584 |
T |
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| Q |
182 |
cttaggaaaccaaacacaaatgcatatccacccaacaaagctgctactaggatcaaccattgagaat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4746583 |
cttaggaaaccaaacacaaatgcatatccacccaacaaagctgctactaggatcaaccattgggaat |
4746517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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