View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9875_low_11 (Length: 320)
Name: NF9875_low_11
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 13867845 - 13868158
Alignment:
| Q |
1 |
ttgcagttctgtgttggtcatcgctgcctcattttccagctcgctcatgcagctaccataccggattgtctccgcgttttcatgaaggatcgtaggattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13867845 |
ttgcagttctgtgttggtcatcgctgcctcagtttccagctcgctcatgcagctaccacaccggattgtctccgtgttttcatgaaggatcgtaggattg |
13867944 |
T |
|
| Q |
101 |
gattcccagggttcaaaaacttaaattattcacaagatctgaagtcgtccaagcacgcgttggagatgttcataaatcctgctgatctcacactgtggca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13867945 |
gattcccagggttcaaaaacttaaattattcacaagatctgaagtcgtcgaagcaggccttggagatgttcataaatcctgctgatctcacactgtggcg |
13868044 |
T |
|
| Q |
201 |
ggaacggttgttgaattactccgtggatgacattgttaaaataattcttggattctgggtgcagctgaaagaagacgttatgatgagcgattggagcgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13868045 |
ggaacggttgttgaattactccgtggatgacattgttaaaataactcttggattcaaggtgcggctgaaagaagacgttaggatgagcgattggagcgta |
13868144 |
T |
|
| Q |
301 |
gaacgtctcagtga |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13868145 |
gaacgtctcagtga |
13868158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 11876422 - 11876254
Alignment:
| Q |
22 |
cgctgcctcattttccagctcgctcatgcagctaccataccggattgtctccgcgttttcatgaaggatcgtaggattggattcccagggttcaaaaact |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| | | | || | ||||||||||||||||| ||||||||||||||| ||||| ||| |
|
|
| T |
11876422 |
cgctgcctcattttccagctcgctcgcgcagataccataccacaaatttttcgtgatttcatgaaggatcgtatgattggattcccaggtttcaataaca |
11876323 |
T |
|
| Q |
122 |
taaattattcacaagatctgaagtcgtccaagcacgcgttggagatgttcataaatcctgctgatctca |
190 |
Q |
| |
|
|| ||||| |||||| ||| |||||| ||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
11876322 |
aaacttatttgcaagatttgaggtcgtcgaagcacgcgttggagatgtacataagtcttgctgatctca |
11876254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 11885732 - 11885982
Alignment:
| Q |
5 |
agttctgtgttggtcatcgctgcctcattttccagctcgctcatgcagctaccataccggattgtctccgcgttttcatgaaggatcgtaggattggatt |
104 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||| || || |||||||||| |||| |||| | ||||| ||||||||| ||||||||| |
|
|
| T |
11885732 |
agttctgtgttggtgatcattgcaacattttccagctcaatcgcacaaataccataccgacttgtatccgtgagttcataaaggatcgtttgattggatt |
11885831 |
T |
|
| Q |
105 |
cccagggttcaaaaacttaaattattcacaagatctgaagtcgtccaagcacgcgttggagatgttcataaatcctgctgatctcacactgtggcaggaa |
204 |
Q |
| |
|
||||||||| || ||| ||| ||||||||| || |||| | ||| |||||| | |||||||||| ||| ||| || || |||| ||| |||| || || |
|
|
| T |
11885832 |
cccagggttgaagaacctaacgtattcacaatatttgaattggtcgaagcacacattggagatgtacatggatcttgttgttctctcacggtgggagcaa |
11885931 |
T |
|
| Q |
205 |
cggttgttgaattactccgtggatgacattgttaaaataattcttggattc |
255 |
Q |
| |
|
|||| |||||| |||| |||||| | || ||||||| | |||||||||| |
|
|
| T |
11885932 |
tggttcttgaatgactcggtggataagatagttaaaaaatgtcttggattc |
11885982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 11876198 - 11876148
Alignment:
| Q |
246 |
tcttggattctgggtgcagctgaaagaagacgttatgatgagcgattggag |
296 |
Q |
| |
|
|||||||||| ||||| ||||| |||| || |||||||||||||||||||| |
|
|
| T |
11876198 |
tcttggattcagggtgaagctggaagacgaggttatgatgagcgattggag |
11876148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University